Resource
| Id | DNase-seq/ENCSR154OUQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR154OUQ [biosample_summary="Homo sapiens omental fat pad tissue female adult (53 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF550NDG|/files/ENCFF550NDG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.17. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_internal_action: Released analysis {ENCAN441AYY|/analyses/ENCAN441AYY/} has in progress subobject document {5875db66-6999-428c-a8e6-e4efefbb81cb|/documents/5875db66-6999-428c-a8e6-e4efefbb81cb/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR154OUQ | float |
DNase-seq_ENCSR154OUQ |
DNase-seq ENCSR154OUQ [biosample_summary="Homo sapiens omental fat pad tissue female adult (53 years)"]
|
 |
[0.03, 8.22] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 55578277 | 1.73% | 251642 |
| chr1 | 4427929 | 1.78% | 19424 |
| chr2 | 5393894 | 2.23% | 24306 |
| chr3 | 3007512 | 1.52% | 13536 |
| chr4 | 1443404 | 0.76% | 6788 |
| chr5 | 2859419 | 1.58% | 12777 |
| chr6 | 2879919 | 1.69% | 13135 |
| chr7 | 2803409 | 1.76% | 12920 |
| chr8 | 2874507 | 1.98% | 13171 |
| chr9 | 2214522 | 1.60% | 10204 |
| chr10 | 4280617 | 3.20% | 19100 |
| chr11 | 2525409 | 1.87% | 11299 |
| chr12 | 1975570 | 1.48% | 9133 |
| chr13 | 1473776 | 1.29% | 6669 |
| chr14 | 1658861 | 1.55% | 7521 |
| chr15 | 2538421 | 2.49% | 11597 |
| chr16 | 2072003 | 2.29% | 9447 |
| chr17 | 1942108 | 2.33% | 8780 |
| chr18 | 1782116 | 2.22% | 8040 |
| chr19 | 1357772 | 2.32% | 6224 |
| chr20 | 2108891 | 3.27% | 9592 |
| chr21 | 964616 | 2.07% | 4388 |
| chr22 | 1210105 | 2.38% | 5418 |
| chrX | 1782325 | 1.14% | 8162 |
| chrY | 1172 | <0.01% | 11 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 251642 | 1 | 1308 | 220.86 | 200 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF933ASP.bed.gz | 2.21 MB | 4221e5733ba7e164272ddac9012ba743 |
| ENCFF933ASP.tabix.bed.gz | 2.14 MB | 79ea37029aee1c47d1dd2e7ae5762d84 |
| ENCFF933ASP.tabix.bed.gz.tbi | 250.77 KB | 00c2467725fb3cdc4ede61f9cf2042be |
| genomic_resource.yaml | 2.26 KB | 34a92cc981d52d13a628c89554ca0e2c |
| statistics/ |