Resource
| Id | DNase-seq/ENCSR152FWD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR152FWD [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-15 for 4 hours"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (39 years) treated with Interleukin-15 for 4 hours output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF241PKF|/files/ENCFF241PKF/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR152FWD | float |
DNase-seq_ENCSR152FWD |
DNase-seq ENCSR152FWD [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-15 for 4 hours"]
|
 |
[0.0688, 52.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 14451444 | 0.45% | 75933 |
| chr1 | 1436234 | 0.58% | 7542 |
| chr2 | 1086656 | 0.45% | 5704 |
| chr3 | 839168 | 0.42% | 4392 |
| chr4 | 541560 | 0.28% | 2887 |
| chr5 | 691191 | 0.38% | 3641 |
| chr6 | 884938 | 0.52% | 4626 |
| chr7 | 666305 | 0.42% | 3522 |
| chr8 | 564448 | 0.39% | 2993 |
| chr9 | 563131 | 0.41% | 3001 |
| chr10 | 684220 | 0.51% | 3590 |
| chr11 | 709561 | 0.53% | 3734 |
| chr12 | 755827 | 0.57% | 3954 |
| chr13 | 316092 | 0.28% | 1683 |
| chr14 | 513057 | 0.48% | 2659 |
| chr15 | 465102 | 0.46% | 2461 |
| chr16 | 539132 | 0.60% | 2824 |
| chr17 | 792567 | 0.95% | 4139 |
| chr18 | 250885 | 0.31% | 1327 |
| chr19 | 788140 | 1.34% | 4051 |
| chr20 | 396791 | 0.62% | 2107 |
| chr21 | 171613 | 0.37% | 902 |
| chr22 | 325000 | 0.64% | 1707 |
| chrX | 448052 | 0.29% | 2374 |
| chrY | 21774 | 0.04% | 113 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 75933 | 2 | 840 | 190.32 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF955TKY.bed.gz | 842.63 KB | afb079a9477c824ea9278f8b44e20a28 |
| ENCFF955TKY.tabix.bed.gz | 775.37 KB | 22d48bf6cb07f14b6edd806ef5cea3d0 |
| ENCFF955TKY.tabix.bed.gz.tbi | 308.69 KB | fc45e62b8bef647360bf5cc40d960901 |
| genomic_resource.yaml | 2.29 KB | 6a8d8a0455b6cffa7a15a0ff34683fa1 |
| statistics/ |