Resource

Id DNase-seq/ENCSR148VUPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR148VUP [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell treated with interleukin-3 for 4 days, kit ligand for 4 days, hydrocortisone succinate for 4 days, erythropoietin for 4 days"]
Description
Labels
  • accession: ENCSR148VUP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000837/
  • biosample_summary: Homo sapiens hematopoietic multipotent progenitor cell treated with interleukin-3 for 4 days, kit ligand for 4 days, hydrocortisone succinate for 4 days, erythropoietin for 4 days
  • date_created: 2015-03-30T19:15:25.042582+00:00
  • date_released: 2015-08-31
  • doi: 10.17989/ENCSR148VUP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (25 years) treated with interleukin-3 for 4 days, kit ligand for 4 days, hydrocortisone succinate for 4 days, erythropoietin for 4 days
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR148VUP float

DNase-seq_ENCSR148VUP
DNase-seq ENCSR148VUP [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell treated with interleukin-3 for 4 days, kit ligand for 4 days, hydrocortisone succinate for 4 days, erythropoietin for 4 days"]
 HISTOGRAM FOR DNase-seq_ENCSR148VUP [0.0172, 44.1]
n
44,952,684
mean
1.75
sd
3.18

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 449526841.40% 245279
chr1 4241761 1.70% 23092
chr2 3616175 1.49% 19857
chr3 3019178 1.52% 16516
chr4 2166696 1.14% 11942
chr5 2409841 1.33% 13278
chr6 2711232 1.59% 14681
chr7 2291670 1.44% 12597
chr8 2005941 1.38% 11072
chr9 1868277 1.35% 10206
chr10 2089581 1.56% 11473
chr11 2177402 1.61% 11870
chr12 2247868 1.69% 12188
chr13 1206677 1.06% 6642
chr14 1435318 1.34% 7821
chr15 1455709 1.43% 7934
chr16 1448005 1.60% 7826
chr17 1923465 2.31% 10336
chr18 968582 1.21% 5351
chr19 1609720 2.75% 8438
chr20 1167240 1.81% 6354
chr21 545927 1.17% 2965
chr22 859994 1.69% 4646
chrX 1408740 0.90% 7765
chrY 77685 0.14% 429
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 245279 1 1040 183.27 180
global segment-length histogram

Files

Filename Size md5
ENCFF618RZR.bed.gz 2.66 MB e1b66d9bee7d275dee3bfcf8b0aeaffb
ENCFF618RZR.tabix.bed.gz 2.42 MB 3121bc2cc4f3068ead489ca58347b300
ENCFF618RZR.tabix.bed.gz.tbi 694.73 KB 82142d737dc4fad3bba209ff471586a1
genomic_resource.yaml 1.87 KB bc5410fb1466a5435ba85fa1c63a2537
statistics/