Resource

Id DNase-seq/ENCSR147QLUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR147QLU [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours"]
Description
Labels
  • accession: ENCSR147QLU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours
  • date_created: 2020-04-19T18:36:54.346862+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR147QLU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR147QLU float

DNase-seq_ENCSR147QLU
DNase-seq ENCSR147QLU [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR147QLU [0.167, 80.1]
n
11,711,316
mean
6.98
sd
8.92

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 117113160.36% 64235
chr1 1175269 0.47% 6418
chr2 823578 0.34% 4562
chr3 654072 0.33% 3581
chr4 413202 0.22% 2246
chr5 518742 0.29% 2901
chr6 700614 0.41% 3782
chr7 522259 0.33% 2887
chr8 458216 0.32% 2547
chr9 495483 0.36% 2720
chr10 529371 0.40% 2929
chr11 585746 0.43% 3247
chr12 598699 0.45% 3261
chr13 236546 0.21% 1296
chr14 393613 0.37% 2154
chr15 389646 0.38% 2174
chr16 483667 0.54% 2618
chr17 700444 0.84% 3786
chr18 193549 0.24% 1069
chr19 731288 1.25% 3908
chr20 340268 0.53% 1917
chr21 134453 0.29% 730
chr22 286710 0.56% 1573
chrX 334593 0.21% 1859
chrY 11288 0.02% 70
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 64235 3 800 182.32 180
global segment-length histogram

Files

Filename Size md5
ENCFF500BBB.bed.gz 710.78 KB 51cba835d7edd8e9c458c1131277039e
ENCFF500BBB.tabix.bed.gz 645.08 KB 464bd01e19eb3d51111188f49c20a546
ENCFF500BBB.tabix.bed.gz.tbi 282.46 KB 9f2b7dc1073b24bc633990f6055bc268
genomic_resource.yaml 2.42 KB 32d67eb95854c6e34afa992ba0a87d3b
statistics/