Resource
| Id | DNase-seq/ENCSR141DMX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR141DMX [biosample_summary="Homo sapiens renal pelvis tissue female embryo (96 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (96 days) output_type: peaks audit_warning: Alignment file {ENCFF777NPC|/files/ENCFF777NPC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 22872720 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR141DMX | float |
DNase-seq_ENCSR141DMX |
DNase-seq ENCSR141DMX [biosample_summary="Homo sapiens renal pelvis tissue female embryo (96 days)"]
|
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[0.307, 23.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 8377940 | 0.26% | 46297 |
| chr1 | 787567 | 0.32% | 4339 |
| chr2 | 620702 | 0.26% | 3472 |
| chr3 | 538676 | 0.27% | 2980 |
| chr4 | 410799 | 0.22% | 2277 |
| chr5 | 455012 | 0.25% | 2560 |
| chr6 | 496965 | 0.29% | 2748 |
| chr7 | 411052 | 0.26% | 2316 |
| chr8 | 371269 | 0.26% | 2051 |
| chr9 | 359078 | 0.26% | 1966 |
| chr10 | 394476 | 0.29% | 2206 |
| chr11 | 427343 | 0.32% | 2350 |
| chr12 | 417928 | 0.31% | 2294 |
| chr13 | 203715 | 0.18% | 1163 |
| chr14 | 279470 | 0.26% | 1499 |
| chr15 | 265307 | 0.26% | 1478 |
| chr16 | 289939 | 0.32% | 1595 |
| chr17 | 372073 | 0.45% | 2025 |
| chr18 | 192185 | 0.24% | 1098 |
| chr19 | 414898 | 0.71% | 2123 |
| chr20 | 208246 | 0.32% | 1187 |
| chr21 | 87176 | 0.19% | 500 |
| chr22 | 153705 | 0.30% | 861 |
| chrX | 220063 | 0.14% | 1207 |
| chrY | 296 | <0.01% | 2 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 46297 | 1 | 881 | 180.96 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF166OIS.bed.gz | 489.96 KB | a743cbba77dbb124726df73cf857797d |
| ENCFF166OIS.tabix.bed.gz | 435.61 KB | 45207f75c2238721aff67766b948bebb |
| ENCFF166OIS.tabix.bed.gz.tbi | 265.25 KB | 18d67934c43dcaf146a01d9654a42ba7 |
| genomic_resource.yaml | 1.84 KB | 295fbb410ca1e9f51b762a4f30241621 |
| statistics/ |
