Resource

Id DNase-seq/ENCSR141DMXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR141DMX [biosample_summary="Homo sapiens renal pelvis tissue female embryo (96 days)"]
Description
Labels
  • accession: ENCSR141DMX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001224/
  • biosample_summary: Homo sapiens renal pelvis tissue female embryo (96 days)
  • date_created: 2015-09-16T21:42:31.623990+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR141DMX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (96 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR141DMX float

DNase-seq_ENCSR141DMX

DNase-seq ENCSR141DMX [biosample_summary="Homo sapiens renal pelvis tissue female embryo (96 days)"]
HISTOGRAM FOR DNase-seq_ENCSR141DMX [0.307, 23.9]
n
8,377,940
mean
3.74
sd
3.53

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 83779400.26% 46297
chr1 787567 0.32% 4339
chr2 620702 0.26% 3472
chr3 538676 0.27% 2980
chr4 410799 0.22% 2277
chr5 455012 0.25% 2560
chr6 496965 0.29% 2748
chr7 411052 0.26% 2316
chr8 371269 0.26% 2051
chr9 359078 0.26% 1966
chr10 394476 0.29% 2206
chr11 427343 0.32% 2350
chr12 417928 0.31% 2294
chr13 203715 0.18% 1163
chr14 279470 0.26% 1499
chr15 265307 0.26% 1478
chr16 289939 0.32% 1595
chr17 372073 0.45% 2025
chr18 192185 0.24% 1098
chr19 414898 0.71% 2123
chr20 208246 0.32% 1187
chr21 87176 0.19% 500
chr22 153705 0.30% 861
chrX 220063 0.14% 1207
chrY 296 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 46297 1 881 180.96 180
global segment-length histogram

Files

Filename Size md5
ENCFF166OIS.bed.gz 489.96 KB a743cbba77dbb124726df73cf857797d
ENCFF166OIS.tabix.bed.gz 435.61 KB 45207f75c2238721aff67766b948bebb
ENCFF166OIS.tabix.bed.gz.tbi 265.25 KB 18d67934c43dcaf146a01d9654a42ba7
genomic_resource.yaml 1.84 KB 295fbb410ca1e9f51b762a4f30241621
statistics/