Resource

Id DNase-seq/ENCSR139KYPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR139KYP [biosample_summary="Homo sapiens T-helper 17 cell female adult (25 years)"]
Description
Labels
  • accession: ENCSR139KYP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000899/
  • biosample_summary: Homo sapiens T-helper 17 cell female adult (25 years)
  • date_created: 2021-11-18T17:43:07.810051+00:00
  • date_released: 2022-06-07
  • doi: 10.17989/ENCSR139KYP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (25 years)
  • status: released
  • submitter_comment: This dataset includes replicates and files that were previously associated with dataset ENCSR623PVB.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR139KYP float

DNase-seq_ENCSR139KYP
DNase-seq ENCSR139KYP [biosample_summary="Homo sapiens T-helper 17 cell female adult (25 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR139KYP [0.213, 21.8]
n
5,015,452
mean
4.08
sd
2.75

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 50154520.16% 23180
chr1 520399 0.21% 2416
chr2 339975 0.14% 1555
chr3 270576 0.14% 1227
chr4 178971 0.09% 805
chr5 216686 0.12% 987
chr6 273208 0.16% 1264
chr7 229189 0.14% 1077
chr8 172174 0.12% 798
chr9 194643 0.14% 900
chr10 206019 0.15% 937
chr11 263840 0.20% 1236
chr12 259369 0.19% 1188
chr13 103233 0.09% 447
chr14 173823 0.16% 809
chr15 154709 0.15% 732
chr16 222466 0.25% 1040
chr17 321581 0.39% 1497
chr18 68543 0.09% 307
chr19 391047 0.67% 1792
chr20 133680 0.21% 640
chr21 56671 0.12% 285
chr22 127062 0.25% 610
chrX 137588 0.09% 631
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 23180 4 840 216.37 220
global segment-length histogram

Files

Filename Size md5
ENCFF815HBL.bed.gz 255.35 KB 76643542281a9dc962e89ec9b5e35d1f
ENCFF815HBL.tabix.bed.gz 233.81 KB baee40927e787b23bde3ed0ab8b36ec7
ENCFF815HBL.tabix.bed.gz.tbi 128.97 KB 76d474f79a7a242c075116c98c44d7cd
genomic_resource.yaml 2.14 KB f13b2c9425c5cc47a8b15f2f40bd2144
statistics/