Resource

Id DNase-seq/ENCSR137FWWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR137FWW [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (90 or above years)"]
Description
Labels
  • accession: ENCSR137FWW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens head of caudate nucleus tissue male adult (90 or above years)
  • date_created: 2020-12-10T18:27:51.579249+00:00
  • date_released: 2021-01-11
  • doi: 10.17989/ENCSR137FWW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (90 or above years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR137FWW float

DNase-seq_ENCSR137FWW

DNase-seq ENCSR137FWW [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (90 or above years)"]
HISTOGRAM FOR DNase-seq_ENCSR137FWW [0.0532, 47.3]
n
18,639,363
mean
3.07
sd
4.73

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 186393630.58% 97516
chr1 1708196 0.69% 8888
chr2 1488467 0.61% 7807
chr3 998439 0.50% 5197
chr4 720433 0.38% 3745
chr5 871667 0.48% 4614
chr6 918386 0.54% 4836
chr7 884613 0.56% 4684
chr8 819859 0.56% 4310
chr9 878361 0.63% 4589
chr10 1006308 0.75% 5234
chr11 1049808 0.78% 5514
chr12 814055 0.61% 4181
chr13 378955 0.33% 1997
chr14 606898 0.57% 3180
chr15 606703 0.59% 3171
chr16 716854 0.79% 3776
chr17 1031607 1.24% 5426
chr18 388318 0.48% 2036
chr19 901012 1.54% 4609
chr20 591091 0.92% 3131
chr21 239704 0.51% 1282
chr22 553682 1.09% 2888
chrX 448815 0.29% 2325
chrY 17132 0.03% 96
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 97516 1 980 191.14 180
global segment-length histogram

Files

Filename Size md5
ENCFF556NPT.bed.gz 1.05 MB 80629b7643f237250ef4849bbeb978c1
ENCFF556NPT.tabix.bed.gz 986.53 KB 17808d440352919d0e2df8a896332cef
ENCFF556NPT.tabix.bed.gz.tbi 338.26 KB 9e8c25ae0ce2378b57caa1141320c3fb
genomic_resource.yaml 1.3 KB 02bcb7289d25ac9eb4fc2d48370593a3
statistics/