Resource

Id DNase-seq/ENCSR134CIYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR134CIY [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours"]
Description
Labels
  • accession: ENCSR134CIY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000504/
  • biosample_summary: Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours
  • date_created: 2020-04-19T18:36:46.628215+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR134CIY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR134CIY float

DNase-seq_ENCSR134CIY
DNase-seq ENCSR134CIY [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR134CIY [0.199, 48.7]
n
9,386,048
mean
4.64
sd
4.13

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 93860480.29% 50950
chr1 953512 0.38% 5128
chr2 669662 0.28% 3640
chr3 522490 0.26% 2813
chr4 341544 0.18% 1828
chr5 427118 0.24% 2315
chr6 560061 0.33% 3009
chr7 417939 0.26% 2276
chr8 352697 0.24% 1950
chr9 386589 0.28% 2101
chr10 412483 0.31% 2286
chr11 477876 0.35% 2608
chr12 486391 0.36% 2627
chr13 188724 0.17% 1011
chr14 319560 0.30% 1742
chr15 315310 0.31% 1727
chr16 391391 0.43% 2092
chr17 544923 0.65% 2959
chr18 161080 0.20% 876
chr19 594675 1.01% 3164
chr20 265849 0.41% 1459
chr21 105606 0.23% 581
chr22 224443 0.44% 1244
chrX 266003 0.17% 1513
chrY 122 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 50950 1 840 184.22 180
global segment-length histogram

Files

Filename Size md5
ENCFF314PFZ.bed.gz 552.34 KB 027ad0e848d07e7ca3b8eced782225e9
ENCFF314PFZ.tabix.bed.gz 502.34 KB 4c69cee68b00113fa89dfd0925510986
ENCFF314PFZ.tabix.bed.gz.tbi 245.3 KB e3d7aa9a5073c186a76c467698fe46ad
genomic_resource.yaml 2.43 KB 82a90caa870d5c4274fe64e941b5e26b
statistics/