Resource

Id DNase-seq/ENCSR134BSYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR134BSY [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
Description
Labels
  • accession: ENCSR134BSY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)
  • date_created: 2020-04-18T22:21:49.756684+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR134BSY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR134BSY float

DNase-seq_ENCSR134BSY
DNase-seq ENCSR134BSY [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR134BSY [0.18, 47.2]
n
6,860,400
mean
5.78
sd
5.98

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 68604000.21% 36536
chr1 703660 0.28% 3736
chr2 467545 0.19% 2492
chr3 365061 0.18% 1956
chr4 225475 0.12% 1184
chr5 301116 0.17% 1600
chr6 392208 0.23% 2073
chr7 312096 0.20% 1683
chr8 241636 0.17% 1320
chr9 272654 0.20% 1438
chr10 293340 0.22% 1587
chr11 361917 0.27% 1930
chr12 358272 0.27% 1881
chr13 137844 0.12% 718
chr14 246587 0.23% 1297
chr15 224192 0.22% 1201
chr16 289210 0.32% 1545
chr17 445128 0.53% 2362
chr18 99278 0.12% 544
chr19 482269 0.82% 2511
chr20 185703 0.29% 1022
chr21 81281 0.17% 438
chr22 168344 0.33% 912
chrX 205584 0.13% 1106
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 36536 1 720 187.77 180
global segment-length histogram

Files

Filename Size md5
ENCFF108LUO.bed.gz 404.62 KB 20ac13762c9925c26379ba7fd680fdb5
ENCFF108LUO.tabix.bed.gz 368.27 KB 7fee699df03a64a20c7f33f10f63d6e9
ENCFF108LUO.tabix.bed.gz.tbi 194.17 KB 3045642ff0b98e2393213e265ca8035c
genomic_resource.yaml 1.88 KB 04cd07084db5d1f7ef647b6f0fc695e9
statistics/