Resource
| Id | DNase-seq/ENCSR133QIE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR133QIE [biosample_summary="Homo sapiens stimulated activated effector memory CD8-positive, alpha-beta T cell male adult (33 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (33 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF192RAV|/files/ENCFF192RAV/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR133QIE | float |
DNase-seq_ENCSR133QIE |
DNase-seq ENCSR133QIE [biosample_summary="Homo sapiens stimulated activated effector memory CD8-positive, alpha-beta T cell male adult (33 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours"]
|
 |
[0.0683, 17.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 9528053 | 0.30% | 42647 |
| chr1 | 980278 | 0.39% | 4343 |
| chr2 | 651016 | 0.27% | 2944 |
| chr3 | 518358 | 0.26% | 2288 |
| chr4 | 319895 | 0.17% | 1431 |
| chr5 | 415979 | 0.23% | 1861 |
| chr6 | 564603 | 0.33% | 2489 |
| chr7 | 426564 | 0.27% | 1930 |
| chr8 | 352339 | 0.24% | 1604 |
| chr9 | 388860 | 0.28% | 1736 |
| chr10 | 431315 | 0.32% | 1953 |
| chr11 | 478800 | 0.35% | 2160 |
| chr12 | 509001 | 0.38% | 2217 |
| chr13 | 178346 | 0.16% | 777 |
| chr14 | 330945 | 0.31% | 1461 |
| chr15 | 313547 | 0.31% | 1460 |
| chr16 | 400709 | 0.44% | 1790 |
| chr17 | 607143 | 0.73% | 2700 |
| chr18 | 145398 | 0.18% | 672 |
| chr19 | 628258 | 1.07% | 2732 |
| chr20 | 265858 | 0.41% | 1253 |
| chr21 | 106851 | 0.23% | 507 |
| chr22 | 238217 | 0.47% | 1083 |
| chrX | 265969 | 0.17% | 1214 |
| chrY | 9804 | 0.02% | 42 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 42647 | 1 | 1160 | 223.42 | 200 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF257BSS.bed.gz | 463.25 KB | 26dfb64af72555225defe5373ed9dba1 |
| ENCFF257BSS.tabix.bed.gz | 429.41 KB | 4a2553418bd6ca196a0ed6d737e149e8 |
| ENCFF257BSS.tabix.bed.gz.tbi | 213.25 KB | 4ed5c9079ed7bc5b5cd71a012a078f6f |
| genomic_resource.yaml | 3.02 KB | 4c44cb834164f06ba546cff3b528c44d |
| statistics/ |