Resource

Id DNase-seq/ENCSR133KBXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR133KBX [biosample_summary="Homo sapiens small intestine tissue female embryo (107 days)"]
Description
Labels
  • accession: ENCSR133KBX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002108/
  • biosample_summary: Homo sapiens small intestine tissue female embryo (107 days)
  • date_created: 2015-09-16T21:42:48.468081+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR133KBX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (107 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR133KBX float

DNase-seq_ENCSR133KBX

DNase-seq ENCSR133KBX [biosample_summary="Homo sapiens small intestine tissue female embryo (107 days)"]
HISTOGRAM FOR DNase-seq_ENCSR133KBX [0.349, 16.7]
n
7,048,387
mean
3.1
sd
2.38

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 70483870.22% 38763
chr1 669142 0.27% 3670
chr2 542927 0.22% 3041
chr3 454499 0.23% 2492
chr4 349509 0.18% 1935
chr5 365800 0.20% 2014
chr6 403096 0.24% 2260
chr7 364911 0.23% 2025
chr8 294301 0.20% 1631
chr9 292755 0.21% 1616
chr10 331234 0.25% 1850
chr11 362087 0.27% 1992
chr12 353985 0.27% 1942
chr13 180264 0.16% 1000
chr14 230386 0.22% 1217
chr15 224710 0.22% 1255
chr16 245071 0.27% 1334
chr17 316613 0.38% 1719
chr18 147227 0.18% 818
chr19 353248 0.60% 1803
chr20 179445 0.28% 1003
chr21 74821 0.16% 412
chr22 128369 0.25% 710
chrX 183585 0.12% 1021
chrY 402 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 38763 4 820 181.83 180
global segment-length histogram

Files

Filename Size md5
ENCFF540NZQ.bed.gz 408.15 KB 171cb3cef36413b722a2e953facc030f
ENCFF540NZQ.tabix.bed.gz 361.7 KB 9bb47f6317a626a82fa44148506d87c8
ENCFF540NZQ.tabix.bed.gz.tbi 230.51 KB 582fd72985b9e4a431a0d55019f235fc
genomic_resource.yaml 1.85 KB aca1bac3a7551d4b7e9836d3dab312f2
statistics/