Resource

Id DNase-seq/ENCSR130HIEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR130HIE [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-7 for 24 hours"]
Description
Labels
  • accession: ENCSR130HIE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-7 for 24 hours
  • date_created: 2020-04-20T23:45:36.667508+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR130HIE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-7 for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR130HIE float

DNase-seq_ENCSR130HIE
DNase-seq ENCSR130HIE [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-7 for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR130HIE [0.432, 38.9]
n
5,991,447
mean
6.04
sd
4.66

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 59914470.19% 32673
chr1 612380 0.25% 3336
chr2 403966 0.17% 2200
chr3 328102 0.17% 1776
chr4 201625 0.11% 1104
chr5 265666 0.15% 1455
chr6 335622 0.20% 1856
chr7 271639 0.17% 1490
chr8 215232 0.15% 1184
chr9 243719 0.18% 1320
chr10 262313 0.20% 1439
chr11 315430 0.23% 1721
chr12 306917 0.23% 1678
chr13 126128 0.11% 681
chr14 208665 0.19% 1116
chr15 200407 0.20% 1120
chr16 253830 0.28% 1381
chr17 361858 0.43% 1974
chr18 89337 0.11% 499
chr19 452284 0.77% 2370
chr20 170011 0.26% 961
chr21 65092 0.14% 372
chr22 148616 0.29% 806
chrX 147449 0.09% 807
chrY 5159 0.01% 27
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 32673 1 700 183.38 180
global segment-length histogram

Files

Filename Size md5
ENCFF176VRX.bed.gz 353.69 KB 18bbe14b0d9ddd5ab65cca3d2496d762
ENCFF176VRX.tabix.bed.gz 318.98 KB b017398f1d0d11f7d6e782f0b6395aa2
ENCFF176VRX.tabix.bed.gz.tbi 184.32 KB 6d00fa0147ab6324d1937cec25e9b900
genomic_resource.yaml 2.46 KB 82b0c086e1ff637eb566b77ba0f4f367
statistics/