Resource

Id DNase-seq/ENCSR129TSGcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR129TSG [biosample_summary="Homo sapiens placenta tissue female embryo (108 days)"]
Description
Labels
  • accession: ENCSR129TSG
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001987/
  • biosample_summary: Homo sapiens placenta tissue female embryo (108 days)
  • date_created: 2015-09-16T21:42:42.920464+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR129TSG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (108 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR129TSG float

DNase-seq_ENCSR129TSG
DNase-seq ENCSR129TSG [biosample_summary="Homo sapiens placenta tissue female embryo (108 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR129TSG [5, 5.78e+03]
n
23,787,844
mean
74
sd
75.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 237878440.74% 158327
chr1 2263232 0.91% 15069
chr2 1947467 0.80% 12959
chr3 1622597 0.82% 10797
chr4 1261529 0.66% 8397
chr5 1361624 0.75% 9060
chr6 1508316 0.88% 10037
chr7 1255475 0.79% 8357
chr8 1076590 0.74% 7163
chr9 1016549 0.73% 6763
chr10 1119547 0.84% 7453
chr11 1155750 0.86% 7699
chr12 1161775 0.87% 7737
chr13 592819 0.52% 3946
chr14 736148 0.69% 4897
chr15 757738 0.74% 5037
chr16 731615 0.81% 4868
chr17 916374 1.10% 6100
chr18 527542 0.66% 3516
chr19 773388 1.32% 5151
chr20 602909 0.94% 4012
chr21 277200 0.59% 1844
chr22 383488 0.75% 2553
chrX 732922 0.47% 4877
chrY 5250 0.01% 35
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 158327 22 450 150.25 150
global segment-length histogram

Files

Filename Size md5
ENCFF564VUG.bed.gz 1.5 MB 4c1983b9356d1e92c0fd8494f6dcc45e
ENCFF564VUG.tabix.bed.gz 1.29 MB 4027463c9e0ae8db90fdf7402cd68de0
ENCFF564VUG.tabix.bed.gz.tbi 592.37 KB dafce843afc3043d231827b09cedbd04
genomic_resource.yaml 1.39 KB dc5149dab70af528bf5f7a22fe68a335
statistics/