Resource

Id DNase-seq/ENCSR129KIVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR129KIV [biosample_summary="Homo sapiens renal cortex interstitium tissue male embryo (108 days)"]
Description
Labels
  • accession: ENCSR129KIV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0005270/
  • biosample_summary: Homo sapiens renal cortex interstitium tissue male embryo (108 days)
  • date_created: 2015-09-16T21:42:34.232574+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR129KIV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (108 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR129KIV float

DNase-seq_ENCSR129KIV
DNase-seq ENCSR129KIV [biosample_summary="Homo sapiens renal cortex interstitium tissue male embryo (108 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR129KIV [0.243, 25.3]
n
9,889,132
mean
3.94
sd
3.74

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 98891320.31% 56194
chr1 902529 0.36% 5171
chr2 773452 0.32% 4387
chr3 619237 0.31% 3556
chr4 490554 0.26% 2847
chr5 539828 0.30% 3087
chr6 588062 0.34% 3288
chr7 496588 0.31% 2844
chr8 447910 0.31% 2546
chr9 423065 0.31% 2419
chr10 471983 0.35% 2708
chr11 504731 0.37% 2885
chr12 503531 0.38% 2856
chr13 245055 0.21% 1422
chr14 336215 0.31% 1873
chr15 320851 0.31% 1842
chr16 333530 0.37% 1870
chr17 419565 0.50% 2341
chr18 222506 0.28% 1289
chr19 457026 0.78% 2394
chr20 261180 0.41% 1504
chr21 100614 0.22% 602
chr22 177749 0.35% 1010
chrX 247328 0.16% 1416
chrY 6043 0.01% 37
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 56194 2 800 175.98 168
global segment-length histogram

Files

Filename Size md5
ENCFF813EFK.bed.gz 600.89 KB e22ab178bcfd8e75b650b8c8f3c2a23e
ENCFF813EFK.tabix.bed.gz 533.86 KB 5d11327968f7e515d3c24e4a3b276a85
ENCFF813EFK.tabix.bed.gz.tbi 313.72 KB d189837c5476ac10ba6c4d303c94f57c
genomic_resource.yaml 1.88 KB e675e9bd9a121b991fa4f23a57f79682
statistics/