Resource

Id DNase-seq/ENCSR126EVKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR126EVK [biosample_summary="Homo sapiens placenta tissue female embryo"]
Description
Labels
  • accession: ENCSR126EVK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001987/
  • biosample_summary: Homo sapiens placenta tissue female embryo
  • date_created: 2019-08-02T16:57:25.665009+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR126EVK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR126EVK float

DNase-seq_ENCSR126EVK

DNase-seq ENCSR126EVK [biosample_summary="Homo sapiens placenta tissue female embryo"]
HISTOGRAM FOR DNase-seq_ENCSR126EVK [0.0351, 81.9]
n
24,665,781
mean
3.34
sd
4.89

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 246657810.77% 136355
chr1 2468332 0.99% 13515
chr2 1824816 0.75% 10253
chr3 1434037 0.72% 8112
chr4 997121 0.52% 5659
chr5 1175722 0.65% 6611
chr6 1376418 0.81% 7724
chr7 1299384 0.82% 7170
chr8 1047866 0.72% 5839
chr9 1115870 0.81% 6179
chr10 1170721 0.87% 6448
chr11 1346627 1.00% 7410
chr12 1136033 0.85% 6317
chr13 490265 0.43% 2797
chr14 841118 0.79% 4596
chr15 797425 0.78% 4431
chr16 897607 0.99% 4845
chr17 1214606 1.46% 6554
chr18 436368 0.54% 2472
chr19 1214354 2.07% 6329
chr20 714630 1.11% 3992
chr21 330280 0.71% 1787
chr22 638747 1.26% 3370
chrX 696753 0.45% 3939
chrY 681 <0.01% 6
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 136355 1 1080 180.89 180
global segment-length histogram

Files

Filename Size md5
ENCFF083LDQ.bed.gz 1.49 MB fe08cf33bbd95a3a25c8c25895872639
ENCFF083LDQ.tabix.bed.gz 1.37 MB be7925b58425e550aee8e48313ece8f1
ENCFF083LDQ.tabix.bed.gz.tbi 444.6 KB 29d378bc42e6596750876053598f65bd
genomic_resource.yaml 1.17 KB 4b811058c6ed2030e7e3311cd336f92c
statistics/