Resource

Id DNase-seq/ENCSR125OEJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR125OEJ [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (50 years)"]
Description
Labels
  • accession: ENCSR125OEJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000895/
  • biosample_summary: Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (50 years)
  • date_created: 2021-09-29T21:42:45.434707+00:00
  • date_released: 2022-01-26
  • doi: 10.17989/ENCSR125OEJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (50 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR125OEJ float

DNase-seq_ENCSR125OEJ
DNase-seq ENCSR125OEJ [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (50 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR125OEJ [0.132, 28.6]
n
7,842,502
mean
3.66
sd
3.31

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 78425020.24% 36398
chr1 801754 0.32% 3664
chr2 551361 0.23% 2526
chr3 411923 0.21% 1932
chr4 273697 0.14% 1253
chr5 354021 0.20% 1626
chr6 427601 0.25% 1959
chr7 376978 0.24% 1733
chr8 293929 0.20% 1428
chr9 329077 0.24% 1549
chr10 347497 0.26% 1591
chr11 420911 0.31% 1969
chr12 387642 0.29% 1776
chr13 146364 0.13% 656
chr14 266926 0.25% 1258
chr15 255853 0.25% 1198
chr16 318938 0.35% 1503
chr17 482900 0.58% 2261
chr18 120325 0.15% 555
chr19 535417 0.91% 2454
chr20 221915 0.34% 1055
chr21 94753 0.20% 461
chr22 192206 0.38% 942
chrX 222193 0.14% 1009
chrY 8321 0.01% 40
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 36398 2 1020 215.47 200
global segment-length histogram

Files

Filename Size md5
ENCFF928NLF.bed.gz 399.93 KB 69ae0aa5f57d0cd77fcb83ba0338624b
ENCFF928NLF.tabix.bed.gz 370.68 KB a71061ae5973432fca197ab103a0a624
ENCFF928NLF.tabix.bed.gz.tbi 181.34 KB 00f80c407e94150e030cd42183150b40
genomic_resource.yaml 1.32 KB 3247d494fdb17ff80f23b62c1a190d32
statistics/