Resource

Id DNase-seq/ENCSR124PXNcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR124PXN [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours"]
Description
Labels
  • accession: ENCSR124PXN
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000896/
  • biosample_summary: Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours
  • date_created: 2020-04-18T22:21:51.264090+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR124PXN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR124PXN float

DNase-seq_ENCSR124PXN
DNase-seq ENCSR124PXN [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR124PXN [0.285, 49.5]
n
7,882,682
mean
6.38
sd
6.69

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 78826820.25% 43208
chr1 806719 0.32% 4424
chr2 561113 0.23% 3107
chr3 441770 0.22% 2442
chr4 280894 0.15% 1543
chr5 350625 0.19% 1936
chr6 472633 0.28% 2584
chr7 362972 0.23% 2017
chr8 289578 0.20% 1592
chr9 313128 0.23% 1712
chr10 349327 0.26% 1936
chr11 401883 0.30% 2193
chr12 411165 0.31% 2242
chr13 166518 0.15% 920
chr14 274914 0.26% 1516
chr15 263930 0.26% 1460
chr16 319779 0.35% 1711
chr17 455013 0.55% 2469
chr18 121751 0.15% 676
chr19 508374 0.87% 2679
chr20 215550 0.33% 1205
chr21 93512 0.20% 523
chr22 183063 0.36% 1005
chrX 238471 0.15% 1316
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 43208 3 660 182.44 180
global segment-length histogram

Files

Filename Size md5
ENCFF055AZI.bed.gz 474.97 KB 0be3b289ddab265612d2c909fdcb02f1
ENCFF055AZI.tabix.bed.gz 429.11 KB 794381e921ff20f46074ee9e69345545
ENCFF055AZI.tabix.bed.gz.tbi 226.67 KB 3115825b30b8def790bbbfa850b53a4c
genomic_resource.yaml 2.22 KB 5fa3fc4fc27f16e09db72e10c9b5fe01
statistics/