Resource

Id DNase-seq/ENCSR121ZSLcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR121ZSL [biosample_summary="Homo sapiens trophoblast cell embryo (21 weeks)"]
Description
Labels
  • accession: ENCSR121ZSL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000351/
  • biosample_summary: Homo sapiens trophoblast cell embryo (21 weeks)
  • date_created: 2015-09-27T06:12:52.398224+00:00
  • date_released: 2016-05-09
  • doi: 10.17989/ENCSR121ZSL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: anisogenic
  • simple_biosample_summary: embryo (21 weeks)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR121ZSL float

DNase-seq_ENCSR121ZSL

DNase-seq ENCSR121ZSL [biosample_summary="Homo sapiens trophoblast cell embryo (21 weeks)"]
HISTOGRAM FOR DNase-seq_ENCSR121ZSL [0.0107, 11.6]
n
72,185,581
mean
1.04
sd
1.13

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 721855812.24% 356784
chr1 6652161 2.67% 32809
chr2 5936436 2.45% 29322
chr3 4884177 2.46% 24134
chr4 3851550 2.02% 19148
chr5 4156836 2.29% 20503
chr6 4572408 2.68% 22465
chr7 3797331 2.38% 18757
chr8 3343639 2.30% 16528
chr9 3049865 2.20% 15097
chr10 3361526 2.51% 16682
chr11 3474161 2.57% 17165
chr12 3528661 2.65% 17406
chr13 2042468 1.79% 10050
chr14 2201332 2.06% 10850
chr15 2293350 2.25% 11349
chr16 2050521 2.27% 10202
chr17 2823635 3.39% 13997
chr18 1618246 2.01% 8040
chr19 2342289 4.00% 11415
chr20 1740598 2.70% 8686
chr21 898146 1.92% 4395
chr22 1244097 2.45% 6157
chrX 2319544 1.49% 11607
chrY 2604 <0.01% 20
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 356784 1 1120 202.32 200
global segment-length histogram

Files

Filename Size md5
ENCFF440FUZ.bed.gz 3.74 MB 850ac94bba9d7ce28cbb610a15a65a5c
ENCFF440FUZ.tabix.bed.gz 3.48 MB 11b585f954b80bcda62b25e56035cadd
ENCFF440FUZ.tabix.bed.gz.tbi 789.2 KB 0f521499d271b4fca27d64ce6eedc552
genomic_resource.yaml 1.19 KB a5312cf980d059a71958f56f13dcb60f
statistics/