Resource

Id DNase-seq/ENCSR120LVWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR120LVW [biosample_summary="Homo sapiens left kidney tissue female embryo (98 days)"]
Description
Labels
  • accession: ENCSR120LVW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004538/
  • biosample_summary: Homo sapiens left kidney tissue female embryo (98 days)
  • date_created: 2015-09-16T21:43:05.044147+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR120LVW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (98 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR120LVW float

DNase-seq_ENCSR120LVW

DNase-seq ENCSR120LVW [biosample_summary="Homo sapiens left kidney tissue female embryo (98 days)"]
HISTOGRAM FOR DNase-seq_ENCSR120LVW [0.127, 19.2]
n
16,482,645
mean
2.02
sd
2.05

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 164826450.51% 85777
chr1 1477858 0.59% 7684
chr2 1310243 0.54% 6774
chr3 1064403 0.54% 5544
chr4 865215 0.45% 4501
chr5 930700 0.51% 4812
chr6 1004525 0.59% 5147
chr7 853078 0.54% 4476
chr8 740983 0.51% 3900
chr9 688402 0.50% 3591
chr10 813607 0.61% 4256
chr11 843635 0.62% 4404
chr12 848309 0.64% 4409
chr13 460304 0.40% 2390
chr14 546091 0.51% 2772
chr15 554442 0.54% 2892
chr16 510795 0.57% 2720
chr17 633187 0.76% 3323
chr18 401058 0.50% 2078
chr19 627628 1.07% 3128
chr20 400117 0.62% 2140
chr21 182223 0.39% 966
chr22 258657 0.51% 1395
chrX 467045 0.30% 2474
chrY 140 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 85777 1 1140 192.16 180
global segment-length histogram

Files

Filename Size md5
ENCFF936FIW.bed.gz 907.93 KB 0bb8e174b7a2b933f4f61107add217db
ENCFF936FIW.tabix.bed.gz 820.46 KB d5dc3ebdf27f368f1ef4bcc3c1e2268d
ENCFF936FIW.tabix.bed.gz.tbi 410.64 KB ca8c78ba2833472f1b999d8002214d3b
genomic_resource.yaml 1.22 KB d93bc5b1aa0438b9171b8fdfaefc97f5
statistics/