Resource
| Id | DNase-seq/ENCSR115YPI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR115YPI [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell treated with erythropoietin for 20 days, hydrocortisone succinate for 20 days, kit ligand for 20 days, interleukin-3 for 20 days"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (25 years) treated with erythropoietin for 20 days, hydrocortisone succinate for 20 days, kit ligand for 20 days, interleukin-3 for 20 days output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF986NWU|/files/ENCFF986NWU/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.22. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_internal_action: Archived analysis {ENCAN637UOT|/analyses/ENCAN637UOT/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR115YPI | float |
DNase-seq_ENCSR115YPI |
DNase-seq ENCSR115YPI [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell treated with erythropoietin for 20 days, hydrocortisone succinate for 20 days, kit ligand for 20 days, interleukin-3 for 20 days"]
|
 |
[5, 5.15e+03] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 11028699 | 0.34% | 73381 |
| chr1 | 1110806 | 0.45% | 7390 |
| chr2 | 810986 | 0.33% | 5393 |
| chr3 | 682106 | 0.34% | 4545 |
| chr4 | 498579 | 0.26% | 3319 |
| chr5 | 568701 | 0.31% | 3786 |
| chr6 | 711887 | 0.42% | 4734 |
| chr7 | 534789 | 0.34% | 3558 |
| chr8 | 445538 | 0.31% | 2962 |
| chr9 | 436743 | 0.32% | 2909 |
| chr10 | 488117 | 0.36% | 3249 |
| chr11 | 571966 | 0.42% | 3806 |
| chr12 | 580874 | 0.44% | 3866 |
| chr13 | 258062 | 0.23% | 1713 |
| chr14 | 353562 | 0.33% | 2348 |
| chr15 | 333156 | 0.33% | 2220 |
| chr16 | 392138 | 0.43% | 2606 |
| chr17 | 534236 | 0.64% | 3560 |
| chr18 | 191700 | 0.24% | 1275 |
| chr19 | 511633 | 0.87% | 3411 |
| chr20 | 293842 | 0.46% | 1950 |
| chr21 | 110216 | 0.24% | 733 |
| chr22 | 232396 | 0.46% | 1546 |
| chrX | 351348 | 0.23% | 2333 |
| chrY | 25318 | 0.04% | 169 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 73381 | 3 | 450 | 150.29 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF515CNP.bed.gz | 729.48 KB | e666868df6d1a64ab878d0e746cdff4a |
| ENCFF515CNP.tabix.bed.gz | 629.67 KB | 2f4dd4054a8b47c980b1c8e9d2445e6f |
| ENCFF515CNP.tabix.bed.gz.tbi | 281.34 KB | a80295cf5ac480d06f8a2c803ad01ae9 |
| genomic_resource.yaml | 2.87 KB | a36cc7b54832ec213ef712ef04ef1795 |
| statistics/ |