Resource

Id DNase-seq/ENCSR114XWVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR114XWV [biosample_summary="Homo sapiens stimulated activated naive CD8-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours, 100 ng/mL Interleukin-15 for 24 hours"]
Description
Labels
  • accession: ENCSR114XWV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000667/
  • biosample_summary: Homo sapiens stimulated activated naive CD8-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours, 100 ng/mL Interleukin-15 for 24 hours
  • date_created: 2021-08-31T15:47:27.532898+00:00
  • date_released: 2021-09-10
  • doi: 10.17989/ENCSR114XWV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours, 100 ng/mL Interleukin-15 for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR114XWV float

DNase-seq_ENCSR114XWV
DNase-seq ENCSR114XWV [biosample_summary="Homo sapiens stimulated activated naive CD8-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours, 100 ng/mL Interleukin-15 for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR114XWV [0.0512, 37.4]
n
17,443,010
mean
3.44
sd
4.33

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 174430100.54% 89907
chr1 1729264 0.69% 8858
chr2 1242920 0.51% 6443
chr3 939858 0.47% 4889
chr4 614098 0.32% 3155
chr5 794247 0.44% 4105
chr6 985036 0.58% 5051
chr7 798558 0.50% 4130
chr8 679385 0.47% 3569
chr9 729940 0.53% 3771
chr10 823635 0.62% 4251
chr11 898194 0.66% 4627
chr12 870852 0.65% 4431
chr13 348011 0.30% 1821
chr14 591220 0.55% 3074
chr15 573568 0.56% 2992
chr16 711511 0.79% 3643
chr17 1041348 1.25% 5259
chr18 313326 0.39% 1632
chr19 1069198 1.82% 5361
chr20 506806 0.79% 2689
chr21 218238 0.47% 1122
chr22 435299 0.86% 2245
chrX 510686 0.33% 2692
chrY 17812 0.03% 97
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 89907 1 900 194.01 180
global segment-length histogram

Files

Filename Size md5
ENCFF676QIM.bed.gz 1000.69 KB 7ce8ad0039b0066f6c6a713ed3e45335
ENCFF676QIM.tabix.bed.gz 918.18 KB fe62410eba74705253b6a75efb93f88c
ENCFF676QIM.tabix.bed.gz.tbi 326.13 KB c9425f1069d65deeff062f0e9a87be6f
genomic_resource.yaml 2.04 KB b190754f1164ee40201b28a1db586a02
statistics/