Resource
| Id | DNase-seq/ENCSR114QAK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR114QAK [biosample_summary="Homo sapiens A673"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF037RUL|/files/ENCFF037RUL/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR114QAK | float |
DNase-seq_ENCSR114QAK |
DNase-seq ENCSR114QAK [biosample_summary="Homo sapiens A673"]
|
 |
[0.112, 22] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 10818924 | 0.34% | 44259 |
| chr1 | 998340 | 0.40% | 3956 |
| chr2 | 789108 | 0.33% | 3191 |
| chr3 | 539074 | 0.27% | 2171 |
| chr4 | 426303 | 0.22% | 1673 |
| chr5 | 515359 | 0.28% | 2070 |
| chr6 | 578087 | 0.34% | 2279 |
| chr7 | 494238 | 0.31% | 2022 |
| chr8 | 480467 | 0.33% | 2007 |
| chr9 | 437456 | 0.32% | 1820 |
| chr10 | 487457 | 0.36% | 2020 |
| chr11 | 779652 | 0.58% | 3246 |
| chr12 | 524461 | 0.39% | 2079 |
| chr13 | 234325 | 0.20% | 912 |
| chr14 | 370802 | 0.35% | 1552 |
| chr15 | 338557 | 0.33% | 1408 |
| chr16 | 389664 | 0.43% | 1624 |
| chr17 | 616170 | 0.74% | 2546 |
| chr18 | 188517 | 0.23% | 762 |
| chr19 | 652207 | 1.11% | 2671 |
| chr20 | 303274 | 0.47% | 1303 |
| chr21 | 133740 | 0.29% | 593 |
| chr22 | 260318 | 0.51% | 1154 |
| chrX | 281045 | 0.18% | 1198 |
| chrY | 303 | <0.01% | 2 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 44259 | 1 | 1320 | 244.45 | 201 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF629STI.bed.gz | 453.24 KB | a3607bc795dd7b439d84c11120231428 |
| ENCFF629STI.tabix.bed.gz | 432.64 KB | 915a38c619fddaab13f2ee955f463675 |
| ENCFF629STI.tabix.bed.gz.tbi | 190.19 KB | 6dc1f9b68cc93510fee4b85876ed2e96 |
| genomic_resource.yaml | 1.9 KB | 3dd9e0f6e14ddd76405c54a439be2953 |
| statistics/ |