Resource

Id DNase-seq/ENCSR111WTEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR111WTE [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (26 years) treated with Interferon alpha-2 for 1 hour"]
Description
Labels
  • accession: ENCSR111WTE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (26 years) treated with Interferon alpha-2 for 1 hour
  • date_created: 2018-11-30T18:43:53.851551+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR111WTE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (26 years) treated with Interferon alpha-2 for 1 hour
  • status: released
  • submitter_comment: This dataset was originally submitted with 2 anisogenic replicates. The second replicate has been moved to ENCSR941MHZ.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR111WTE float

DNase-seq_ENCSR111WTE
DNase-seq ENCSR111WTE [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (26 years) treated with Interferon alpha-2 for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR111WTE [0.0621, 140]
n
13,332,083
mean
5.87
sd
11.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 133320830.41% 72048
chr1 1315740 0.53% 7114
chr2 951187 0.39% 5201
chr3 747862 0.38% 4078
chr4 464130 0.24% 2526
chr5 614499 0.34% 3331
chr6 773726 0.45% 4202
chr7 606406 0.38% 3293
chr8 524518 0.36% 2880
chr9 534540 0.39% 2907
chr10 602875 0.45% 3274
chr11 680968 0.50% 3684
chr12 682553 0.51% 3684
chr13 252678 0.22% 1373
chr14 456754 0.43% 2475
chr15 436382 0.43% 2367
chr16 519957 0.58% 2801
chr17 801447 0.96% 4285
chr18 222110 0.28% 1225
chr19 873630 1.49% 4451
chr20 398339 0.62% 2174
chr21 166169 0.36% 926
chr22 335702 0.66% 1796
chrX 369613 0.24% 1998
chrY 298 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 72048 3 880 185.04 180
global segment-length histogram

Files

Filename Size md5
ENCFF511LIR.bed.gz 816.5 KB 33feca42425f1c6430888edc7d5538cf
ENCFF511LIR.tabix.bed.gz 742.43 KB 9cc0bc274dde0e651155c5a130303a49
ENCFF511LIR.tabix.bed.gz.tbi 296.58 KB d8deeb5ee6e6aca959017041f938c45e
genomic_resource.yaml 1.6 KB 633f279d23a0c0a47faea15a0f1699e0
statistics/