Resource

Id DNase-seq/ENCSR109RIQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR109RIQ [biosample_summary="Homo sapiens glutamatergic neuron nuclear fraction and unspecified fraction"]
Description
Labels
  • accession: ENCSR109RIQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000679/
  • biosample_summary: Homo sapiens glutamatergic neuron nuclear fraction and unspecified fraction
  • date_created: 2020-03-30T18:59:07.022970+00:00
  • date_released: 2022-02-25
  • doi: 10.17989/ENCSR109RIQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (53 years) male adult (53 years) nuclear fraction
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR109RIQ float

DNase-seq_ENCSR109RIQ
DNase-seq ENCSR109RIQ [biosample_summary="Homo sapiens glutamatergic neuron nuclear fraction and unspecified fraction"]
 HISTOGRAM FOR DNase-seq_ENCSR109RIQ [0.0575, 53.8]
n
21,072,086
mean
2.65
sd
3.41

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 210720860.65% 110863
chr1 1875554 0.75% 9814
chr2 1540662 0.64% 8167
chr3 1053001 0.53% 5655
chr4 896052 0.47% 4719
chr5 1022642 0.56% 5504
chr6 974427 0.57% 5263
chr7 1085033 0.68% 5701
chr8 958102 0.66% 5017
chr9 1012994 0.73% 5315
chr10 1040935 0.78% 5460
chr11 1221500 0.90% 6320
chr12 918732 0.69% 4871
chr13 465886 0.41% 2480
chr14 707404 0.66% 3682
chr15 641068 0.63% 3414
chr16 847546 0.94% 4514
chr17 1118715 1.34% 5800
chr18 445747 0.55% 2364
chr19 1065256 1.82% 5429
chr20 742996 1.15% 3861
chr21 322100 0.69% 1611
chr22 580720 1.14% 3015
chrX 519055 0.33% 2797
chrY 15959 0.03% 90
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 110863 3 960 190.07 180
global segment-length histogram

Files

Filename Size md5
ENCFF721KLM.bed.gz 1.19 MB 4f7cbc1d0593a328e5342d9f1dc4d2e7
ENCFF721KLM.tabix.bed.gz 1.09 MB d702478c59ec61b75882b80a7e7dac77
ENCFF721KLM.tabix.bed.gz.tbi 383.79 KB c823aaae005e02c81ec75131e8a91908
genomic_resource.yaml 1.38 KB 1acde9b7a6746b9788de2b64578153d2
statistics/