Resource

Id DNase-seq/ENCSR108SYMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR108SYM [biosample_summary="Homo sapiens psoas muscle tissue female adult (61 years)"]
Description
Labels
  • accession: ENCSR108SYM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0008450/
  • biosample_summary: Homo sapiens psoas muscle tissue female adult (61 years)
  • date_created: 2019-02-01T20:17:02.177696+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR108SYM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (61 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR108SYM float

DNase-seq_ENCSR108SYM

DNase-seq ENCSR108SYM [biosample_summary="Homo sapiens psoas muscle tissue female adult (61 years)"]
HISTOGRAM FOR DNase-seq_ENCSR108SYM [0.0338, 54.7]
n
31,624,173
mean
1.88
sd
3.89

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 316241730.98% 166785
chr1 2869580 1.15% 15101
chr2 2291651 0.95% 12171
chr3 1562722 0.79% 8395
chr4 1166029 0.61% 6039
chr5 1242334 0.68% 6775
chr6 1120462 0.66% 6106
chr7 1655502 1.04% 8760
chr8 1234279 0.85% 6464
chr9 1590334 1.15% 8259
chr10 1601190 1.20% 8544
chr11 2017089 1.49% 10404
chr12 1258174 0.94% 6754
chr13 536155 0.47% 2887
chr14 1052591 0.98% 5584
chr15 943087 0.92% 5062
chr16 1577267 1.75% 8206
chr17 2171237 2.61% 11339
chr18 432587 0.54% 2322
chr19 1683315 2.87% 8672
chr20 1112232 1.73% 5811
chr21 586806 1.26% 2997
chr22 1328266 2.61% 6838
chrX 589359 0.38% 3279
chrY 1925 <0.01% 16
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 166785 1 980 189.61 180
global segment-length histogram

Files

Filename Size md5
ENCFF746ZFS.bed.gz 1.72 MB 0de7b5a5322b52eea24b8c87bd8aec69
ENCFF746ZFS.tabix.bed.gz 1.58 MB 7898c62cac6777ea88ce8f3357eeebfb
ENCFF746ZFS.tabix.bed.gz.tbi 350.72 KB 417acd0725c9d3a362a763d3eb2d562c
genomic_resource.yaml 1.23 KB 3717e3d275f4a1a0ead3b340a0fa2658
statistics/