Resource
| Id | DNase-seq/ENCSR108PUO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR108PUO [biosample_summary="Homo sapiens GM23338"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF376XJI|/files/ENCFF376XJI/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR108PUO | float |
DNase-seq_ENCSR108PUO |
DNase-seq ENCSR108PUO [biosample_summary="Homo sapiens GM23338"]
|
 |
[0.0616, 7.79] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 21320795 | 0.66% | 93560 |
| chr1 | 1900857 | 0.76% | 8247 |
| chr2 | 1767809 | 0.73% | 7668 |
| chr3 | 1100992 | 0.56% | 4814 |
| chr4 | 751412 | 0.40% | 3167 |
| chr5 | 971171 | 0.53% | 4206 |
| chr6 | 882356 | 0.52% | 3905 |
| chr7 | 1043367 | 0.65% | 4639 |
| chr8 | 920893 | 0.63% | 4043 |
| chr9 | 981391 | 0.71% | 4316 |
| chr10 | 1099008 | 0.82% | 4843 |
| chr11 | 1432447 | 1.06% | 6114 |
| chr12 | 836869 | 0.63% | 3724 |
| chr13 | 406442 | 0.36% | 1748 |
| chr14 | 733969 | 0.69% | 3264 |
| chr15 | 858161 | 0.84% | 3803 |
| chr16 | 823104 | 0.91% | 3709 |
| chr17 | 1224124 | 1.47% | 5467 |
| chr18 | 377434 | 0.47% | 1682 |
| chr19 | 1048903 | 1.79% | 4718 |
| chr20 | 735265 | 1.14% | 3296 |
| chr21 | 328578 | 0.70% | 1400 |
| chr22 | 761140 | 1.50% | 3236 |
| chrX | 326638 | 0.21% | 1514 |
| chrY | 8465 | 0.01% | 37 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 93560 | 1 | 1320 | 227.88 | 204 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF580UGT.bed.gz | 935.79 KB | 2f5c0a3d032cb9ff70c9ca40046b551f |
| ENCFF580UGT.tabix.bed.gz | 891.3 KB | bdb95fe3b36459cd1a97bc0cd546d44e |
| ENCFF580UGT.tabix.bed.gz.tbi | 247.58 KB | a3ee757b86f18c8a3a695de66341b7fc |
| genomic_resource.yaml | 1.92 KB | 65aa13d9af3a66e4aafdbc8263789809 |
| statistics/ |