Resource

Id DNase-seq/ENCSR107XZCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR107XZC [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours"]
Description
Labels
  • accession: ENCSR107XZC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours
  • date_created: 2020-04-19T18:36:53.547675+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR107XZC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR107XZC float

DNase-seq_ENCSR107XZC
DNase-seq ENCSR107XZC [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR107XZC [0.139, 69]
n
9,901,307
mean
7.24
sd
8.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 99013070.31% 53058
chr1 1008292 0.41% 5381
chr2 682835 0.28% 3668
chr3 525081 0.26% 2798
chr4 350236 0.18% 1852
chr5 430562 0.24% 2335
chr6 579028 0.34% 3094
chr7 447480 0.28% 2418
chr8 371709 0.26% 2019
chr9 417007 0.30% 2233
chr10 438291 0.33% 2359
chr11 497095 0.37% 2675
chr12 507041 0.38% 2681
chr13 186484 0.16% 998
chr14 336816 0.31% 1805
chr15 321301 0.32% 1735
chr16 424590 0.47% 2267
chr17 612231 0.74% 3261
chr18 160795 0.20% 874
chr19 666304 1.14% 3507
chr20 281688 0.44% 1547
chr21 115086 0.25% 625
chr22 245833 0.48% 1331
chrX 284616 0.18% 1537
chrY 10906 0.02% 58
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 53058 1 840 186.61 180
global segment-length histogram

Files

Filename Size md5
ENCFF111AUI.bed.gz 590.49 KB 327eddc122deddea728b2303296b899f
ENCFF111AUI.tabix.bed.gz 539.13 KB c82b733fb4ac2b633def8172d7624949
ENCFF111AUI.tabix.bed.gz.tbi 239.59 KB e5abf150ecfb78e1e7a0a20ff73fbb1e
genomic_resource.yaml 1.82 KB 7450c073f40853771a3f8727e91791e6
statistics/