Resource

Id DNase-seq/ENCSR106OKXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR106OKX [biosample_summary="Homo sapiens kidney tissue female embryo (120 days)"]
Description
Labels
  • accession: ENCSR106OKX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002113/
  • biosample_summary: Homo sapiens kidney tissue female embryo (120 days)
  • date_created: 2015-09-16T21:42:50.690620+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR106OKX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (120 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR106OKX float

DNase-seq_ENCSR106OKX
DNase-seq ENCSR106OKX [biosample_summary="Homo sapiens kidney tissue female embryo (120 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR106OKX [0.256, 32.3]
n
9,755,346
mean
3.9
sd
4.36

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 97553460.30% 56353
chr1 920818 0.37% 5294
chr2 745119 0.31% 4330
chr3 614524 0.31% 3555
chr4 474492 0.25% 2789
chr5 518814 0.29% 3061
chr6 557742 0.33% 3227
chr7 488232 0.31% 2867
chr8 421288 0.29% 2487
chr9 411587 0.30% 2376
chr10 462240 0.35% 2698
chr11 497911 0.37% 2911
chr12 493388 0.37% 2847
chr13 246320 0.22% 1449
chr14 305466 0.29% 1753
chr15 320820 0.31% 1838
chr16 339272 0.38% 1941
chr17 443414 0.53% 2484
chr18 208437 0.26% 1241
chr19 469028 0.80% 2479
chr20 263128 0.41% 1527
chr21 106558 0.23% 613
chr22 183169 0.36% 1052
chrX 263279 0.17% 1532
chrY 300 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 56353 2 800 173.11 165
global segment-length histogram

Files

Filename Size md5
ENCFF388NNQ.bed.gz 601.33 KB 53d093fdc8a9603386b8e69f4a7aa71f
ENCFF388NNQ.tabix.bed.gz 536.87 KB dd6de313cb76beaef477405a5f2bd867
ENCFF388NNQ.tabix.bed.gz.tbi 313.95 KB 1f561c10e39c1acaa3e663eef6bf1e81
genomic_resource.yaml 1.83 KB d112b0dd0d8e071eba19c9d9a5b54892
statistics/