Resource

Id DNase-seq/ENCSR104QUEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR104QUE [biosample_summary="Homo sapiens activated gamma-delta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours"]
Description
Labels
  • accession: ENCSR104QUE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000672/
  • biosample_summary: Homo sapiens activated gamma-delta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours
  • date_created: 2020-04-16T03:32:07.649744+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR104QUE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR104QUE float

DNase-seq_ENCSR104QUE
DNase-seq ENCSR104QUE [biosample_summary="Homo sapiens activated gamma-delta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR104QUE [0.255, 44.4]
n
7,835,176
mean
5.18
sd
5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 78351760.24% 41648
chr1 809040 0.32% 4296
chr2 549284 0.23% 2913
chr3 425554 0.21% 2263
chr4 271070 0.14% 1442
chr5 341886 0.19% 1835
chr6 452114 0.26% 2412
chr7 354832 0.22% 1898
chr8 284226 0.20% 1525
chr9 313132 0.23% 1647
chr10 346391 0.26% 1882
chr11 395512 0.29% 2118
chr12 403243 0.30% 2136
chr13 157977 0.14% 827
chr14 281015 0.26% 1473
chr15 251924 0.25% 1347
chr16 336121 0.37% 1774
chr17 489437 0.59% 2602
chr18 119265 0.15% 636
chr19 535756 0.91% 2765
chr20 218780 0.34% 1195
chr21 85717 0.18% 463
chr22 189528 0.37% 1011
chrX 223372 0.14% 1188
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 41648 2 864 188.13 180
global segment-length histogram

Files

Filename Size md5
ENCFF992MSV.bed.gz 457.88 KB 01950ec6a9a0886a195d35f9f13d83c9
ENCFF992MSV.tabix.bed.gz 416.99 KB 105cebcea2e43bf440b43e3d5b2a7ea8
ENCFF992MSV.tabix.bed.gz.tbi 210.42 KB 4270a8cdc8270da9540d1e674f926bad
genomic_resource.yaml 2.37 KB 3ba7df962444360e887dff7bb4ad69a1
statistics/