Resource
| Id | DNase-seq/ENCSR101QXF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR101QXF [biosample_summary="Homo sapiens suprapubic skin tissue female adult (53 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF134TIX|/files/ENCFF134TIX/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR101QXF | float |
DNase-seq_ENCSR101QXF |
DNase-seq ENCSR101QXF [biosample_summary="Homo sapiens suprapubic skin tissue female adult (53 years)"]
|
 |
[0.0383, 12.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 28591430 | 0.89% | 136354 |
| chr1 | 2559751 | 1.03% | 12127 |
| chr2 | 2440388 | 1.01% | 11582 |
| chr3 | 1406054 | 0.71% | 6685 |
| chr4 | 856804 | 0.45% | 4057 |
| chr5 | 1218828 | 0.67% | 5810 |
| chr6 | 1107851 | 0.65% | 5397 |
| chr7 | 1509063 | 0.95% | 7242 |
| chr8 | 1202938 | 0.83% | 5727 |
| chr9 | 1354305 | 0.98% | 6459 |
| chr10 | 1556223 | 1.16% | 7482 |
| chr11 | 1749318 | 1.29% | 8203 |
| chr12 | 1136879 | 0.85% | 5547 |
| chr13 | 457288 | 0.40% | 2160 |
| chr14 | 1072838 | 1.00% | 5023 |
| chr15 | 1027400 | 1.01% | 4925 |
| chr16 | 1202506 | 1.33% | 5832 |
| chr17 | 1792749 | 2.15% | 8551 |
| chr18 | 465272 | 0.58% | 2297 |
| chr19 | 1208983 | 2.06% | 5821 |
| chr20 | 898191 | 1.39% | 4333 |
| chr21 | 613456 | 1.31% | 2813 |
| chr22 | 1218016 | 2.40% | 5606 |
| chrX | 534881 | 0.34% | 2664 |
| chrY | 1448 | <0.01% | 11 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 136354 | 1 | 1280 | 209.69 | 200 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF577YQU.bed.gz | 1.33 MB | 3d67123a829537b460b55ff34d150efe |
| ENCFF577YQU.tabix.bed.gz | 1.26 MB | f27ddeae1890cce84b045a113b26a959 |
| ENCFF577YQU.tabix.bed.gz.tbi | 249.21 KB | 683442cda8d367fe020da34f853ba3d8 |
| genomic_resource.yaml | 2.05 KB | aabdb77c953377a43b8089d57d537d80 |
| statistics/ |