Resource

Id DNase-seq/ENCSR097AMIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR097AMI [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell female adult (33 years)"]
Description
Labels
  • accession: ENCSR097AMI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000625/
  • biosample_summary: Homo sapiens CD8-positive, alpha-beta T cell female adult (33 years)
  • date_created: 2020-04-19T18:36:47.108059+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR097AMI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR097AMI float

DNase-seq_ENCSR097AMI
DNase-seq ENCSR097AMI [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell female adult (33 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR097AMI [0.316, 51.9]
n
6,338,805
mean
7.63
sd
7.45

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 63388050.20% 33848
chr1 648659 0.26% 3451
chr2 438867 0.18% 2353
chr3 342990 0.17% 1821
chr4 214273 0.11% 1135
chr5 276726 0.15% 1501
chr6 354642 0.21% 1914
chr7 300969 0.19% 1601
chr8 229559 0.16% 1233
chr9 253435 0.18% 1361
chr10 265827 0.20% 1428
chr11 329945 0.24% 1772
chr12 324082 0.24% 1709
chr13 127822 0.11% 675
chr14 218883 0.20% 1192
chr15 207365 0.20% 1124
chr16 271464 0.30% 1435
chr17 404176 0.49% 2150
chr18 96395 0.12% 520
chr19 452249 0.77% 2341
chr20 174059 0.27% 947
chr21 73134 0.16% 387
chr22 156188 0.31% 845
chrX 177096 0.11% 953
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 33848 2 680 187.27 180
global segment-length histogram

Files

Filename Size md5
ENCFF057GMN.bed.gz 372.11 KB b263f81b67359b26c07d85109ad7488f
ENCFF057GMN.tabix.bed.gz 336.45 KB 7d0e657257d9adb791bd9f0324e9202d
ENCFF057GMN.tabix.bed.gz.tbi 186.63 KB a540b2eb687dd9c65b1b2bbe99a79a20
genomic_resource.yaml 1.88 KB f23f83316b6cbb45123f4fb2e411e53f
statistics/