Resource
| Id | DNase-seq/ENCSR083HYP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR083HYP [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF655QXW|/files/ENCFF655QXW/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR083HYP | float |
DNase-seq_ENCSR083HYP |
DNase-seq ENCSR083HYP [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"]
|
 |
[0.0622, 10.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 13970498 | 0.43% | 73033 |
| chr1 | 1220814 | 0.49% | 6422 |
| chr2 | 1216921 | 0.50% | 6359 |
| chr3 | 728166 | 0.37% | 3823 |
| chr4 | 477055 | 0.25% | 2461 |
| chr5 | 741311 | 0.41% | 3923 |
| chr6 | 512553 | 0.30% | 2753 |
| chr7 | 751358 | 0.47% | 3896 |
| chr8 | 659471 | 0.45% | 3441 |
| chr9 | 602867 | 0.44% | 3143 |
| chr10 | 887897 | 0.66% | 4546 |
| chr11 | 875752 | 0.65% | 4512 |
| chr12 | 491945 | 0.37% | 2600 |
| chr13 | 283509 | 0.25% | 1443 |
| chr14 | 484093 | 0.45% | 2508 |
| chr15 | 440656 | 0.43% | 2373 |
| chr16 | 535437 | 0.59% | 2838 |
| chr17 | 688745 | 0.83% | 3642 |
| chr18 | 269249 | 0.33% | 1430 |
| chr19 | 610790 | 1.04% | 3146 |
| chr20 | 389618 | 0.60% | 2078 |
| chr21 | 246181 | 0.53% | 1238 |
| chr22 | 563810 | 1.11% | 2939 |
| chrX | 291226 | 0.19% | 1509 |
| chrY | 1074 | <0.01% | 10 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 73033 | 1 | 1000 | 191.29 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF854UOQ.bed.gz | 749.47 KB | f30ce56e44090ee27d41ce8be75b97ad |
| ENCFF854UOQ.tabix.bed.gz | 692.22 KB | 6e4e196b5b666e8bcdec301054236a74 |
| ENCFF854UOQ.tabix.bed.gz.tbi | 213.96 KB | 4b496d8f6b646491e0f48e23dc0e3990 |
| genomic_resource.yaml | 2.12 KB | 41d8a50cae8a34d3c39a17e8b5c931a4 |
| statistics/ |