Resource
| Id | DNase-seq/ENCSR083FBK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR083FBK [biosample_summary="Homo sapiens small intestine tissue female embryo (110 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (110 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN592UBL|/analyses/ENCAN592UBL/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF697AKY|/files/ENCFF697AKY/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 36488096 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF204MVL|/files/ENCFF204MVL/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 36224662 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR083FBK | float |
DNase-seq_ENCSR083FBK |
DNase-seq ENCSR083FBK [biosample_summary="Homo sapiens small intestine tissue female embryo (110 days)"]
|
 |
[4, 1.42e+03] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 13550847 | 0.42% | 89985 |
| chr1 | 1258833 | 0.51% | 8374 |
| chr2 | 1087016 | 0.45% | 7212 |
| chr3 | 905356 | 0.46% | 6013 |
| chr4 | 737280 | 0.39% | 4889 |
| chr5 | 749960 | 0.41% | 4964 |
| chr6 | 861017 | 0.50% | 5725 |
| chr7 | 705426 | 0.44% | 4686 |
| chr8 | 613045 | 0.42% | 4068 |
| chr9 | 559321 | 0.40% | 3719 |
| chr10 | 622031 | 0.46% | 4130 |
| chr11 | 684517 | 0.51% | 4537 |
| chr12 | 684105 | 0.51% | 4541 |
| chr13 | 375828 | 0.33% | 2498 |
| chr14 | 440056 | 0.41% | 2920 |
| chr15 | 426236 | 0.42% | 2832 |
| chr16 | 417794 | 0.46% | 2780 |
| chr17 | 539709 | 0.65% | 3586 |
| chr18 | 321082 | 0.40% | 2137 |
| chr19 | 453490 | 0.77% | 3017 |
| chr20 | 331460 | 0.51% | 2201 |
| chr21 | 152837 | 0.33% | 1014 |
| chr22 | 231338 | 0.46% | 1535 |
| chrX | 391910 | 0.25% | 2599 |
| chrY | 1200 | <0.01% | 8 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 89985 | 2 | 450 | 150.59 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF130CZB.bed.gz | 871.45 KB | 124749e83dfdcecc0b703295613704f0 |
| ENCFF130CZB.tabix.bed.gz | 746.12 KB | c2d8656fe0473e0d436e8ef043060434 |
| ENCFF130CZB.tabix.bed.gz.tbi | 422.18 KB | beb8a9c0ee43551b9c06c45dcb2d007f |
| genomic_resource.yaml | 2.61 KB | ed9e94e0bbd28b3a15cdab623acf1fc4 |
| statistics/ |