Resource
| Id | DNase-seq/ENCSR082PDJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR082PDJ [biosample_summary="Homo sapiens psoas muscle tissue female child (16 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female child (16 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF609OFI|/files/ENCFF609OFI/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR082PDJ | float |
DNase-seq_ENCSR082PDJ |
DNase-seq ENCSR082PDJ [biosample_summary="Homo sapiens psoas muscle tissue female child (16 years)"]
|
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[0.0475, 15.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 11574419 | 0.36% | 63591 |
| chr1 | 1068851 | 0.43% | 5849 |
| chr2 | 1058450 | 0.44% | 5846 |
| chr3 | 660416 | 0.33% | 3653 |
| chr4 | 379773 | 0.20% | 2076 |
| chr5 | 569493 | 0.31% | 3166 |
| chr6 | 610950 | 0.36% | 3374 |
| chr7 | 526908 | 0.33% | 2916 |
| chr8 | 451555 | 0.31% | 2520 |
| chr9 | 523255 | 0.38% | 2854 |
| chr10 | 621474 | 0.46% | 3484 |
| chr11 | 663002 | 0.49% | 3637 |
| chr12 | 496735 | 0.37% | 2675 |
| chr13 | 226124 | 0.20% | 1250 |
| chr14 | 370391 | 0.35% | 2056 |
| chr15 | 454746 | 0.45% | 2510 |
| chr16 | 423188 | 0.47% | 2341 |
| chr17 | 604090 | 0.73% | 3257 |
| chr18 | 206661 | 0.26% | 1131 |
| chr19 | 599153 | 1.02% | 3111 |
| chr20 | 324776 | 0.50% | 1821 |
| chr21 | 157098 | 0.34% | 867 |
| chr22 | 309630 | 0.61% | 1728 |
| chrX | 266966 | 0.17% | 1462 |
| chrY | 734 | <0.01% | 7 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 63591 | 1 | 820 | 182.01 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF581OTH.bed.gz | 695.31 KB | 807999b257acfca69d3335e82229328d |
| ENCFF581OTH.tabix.bed.gz | 634.46 KB | 7d0cc8b0bb47e3b0730faa7f0c0c44e6 |
| ENCFF581OTH.tabix.bed.gz.tbi | 256.07 KB | ba36685e08564209b2a048e1554d589a |
| genomic_resource.yaml | 2.04 KB | 32748562b55ef57b830205b25ec9b025 |
| statistics/ |
