Resource

Id DNase-seq/ENCSR082PDJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR082PDJ [biosample_summary="Homo sapiens psoas muscle tissue female child (16 years)"]
Description
Labels
  • accession: ENCSR082PDJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0008450/
  • biosample_summary: Homo sapiens psoas muscle tissue female child (16 years)
  • date_created: 2019-11-01T17:50:06.768824+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR082PDJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female child (16 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR082PDJ float

DNase-seq_ENCSR082PDJ

DNase-seq ENCSR082PDJ [biosample_summary="Homo sapiens psoas muscle tissue female child (16 years)"]
HISTOGRAM FOR DNase-seq_ENCSR082PDJ [0.0475, 15.8]
n
11,574,419
mean
1.59
sd
1.76

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 115744190.36% 63591
chr1 1068851 0.43% 5849
chr2 1058450 0.44% 5846
chr3 660416 0.33% 3653
chr4 379773 0.20% 2076
chr5 569493 0.31% 3166
chr6 610950 0.36% 3374
chr7 526908 0.33% 2916
chr8 451555 0.31% 2520
chr9 523255 0.38% 2854
chr10 621474 0.46% 3484
chr11 663002 0.49% 3637
chr12 496735 0.37% 2675
chr13 226124 0.20% 1250
chr14 370391 0.35% 2056
chr15 454746 0.45% 2510
chr16 423188 0.47% 2341
chr17 604090 0.73% 3257
chr18 206661 0.26% 1131
chr19 599153 1.02% 3111
chr20 324776 0.50% 1821
chr21 157098 0.34% 867
chr22 309630 0.61% 1728
chrX 266966 0.17% 1462
chrY 734 <0.01% 7
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 63591 1 820 182.01 180
global segment-length histogram

Files

Filename Size md5
ENCFF581OTH.bed.gz 695.31 KB 807999b257acfca69d3335e82229328d
ENCFF581OTH.tabix.bed.gz 634.46 KB 7d0cc8b0bb47e3b0730faa7f0c0c44e6
ENCFF581OTH.tabix.bed.gz.tbi 256.07 KB ba36685e08564209b2a048e1554d589a
genomic_resource.yaml 2.04 KB 32748562b55ef57b830205b25ec9b025
statistics/