Resource

Id DNase-seq/ENCSR075MQZcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR075MQZ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours"]
Description
Labels
  • accession: ENCSR075MQZ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours
  • date_created: 2020-04-19T18:36:52.309718+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR075MQZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR075MQZ float

DNase-seq_ENCSR075MQZ
DNase-seq ENCSR075MQZ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR075MQZ [0.243, 50.8]
n
9,838,202
mean
5.41
sd
5.48

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 98382020.31% 53782
chr1 989860 0.40% 5425
chr2 706217 0.29% 3874
chr3 557269 0.28% 3039
chr4 355557 0.19% 1933
chr5 436597 0.24% 2422
chr6 572713 0.34% 3110
chr7 448445 0.28% 2450
chr8 374089 0.26% 2083
chr9 416271 0.30% 2274
chr10 440789 0.33% 2426
chr11 495784 0.37% 2730
chr12 507562 0.38% 2735
chr13 197089 0.17% 1081
chr14 329017 0.31% 1792
chr15 325292 0.32% 1806
chr16 407178 0.45% 2201
chr17 580710 0.70% 3126
chr18 159287 0.20% 883
chr19 628300 1.07% 3314
chr20 276199 0.43% 1562
chr21 115968 0.25% 635
chr22 238965 0.47% 1308
chrX 270042 0.17% 1519
chrY 9002 0.02% 54
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 53782 4 760 182.93 180
global segment-length histogram

Files

Filename Size md5
ENCFF704UQE.bed.gz 588.91 KB 7af713fa39af5597622636a6dd67bc17
ENCFF704UQE.tabix.bed.gz 534.01 KB 2c84fab47a950f95b2c5e1a1b4ffd725
ENCFF704UQE.tabix.bed.gz.tbi 256.68 KB 71ecb5ad93fd5cb1b803ebb646e51e22
genomic_resource.yaml 2.78 KB a6638470d9f00b6874c77b651659fd39
statistics/