Resource

Id DNase-seq/ENCSR068KDQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR068KDQ [biosample_summary="Homo sapiens with multiple sclerosis; naive thymus-derived CD8-positive, alpha-beta T cell"]
Description
Labels
  • accession: ENCSR068KDQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000900/
  • biosample_summary: Homo sapiens with multiple sclerosis; naive thymus-derived CD8-positive, alpha-beta T cell
  • date_created: 2022-02-07T22:20:21.578922+00:00
  • date_released: 2022-02-25
  • doi: 10.17989/ENCSR068KDQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: with multiple sclerosis
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR068KDQ float

DNase-seq_ENCSR068KDQ
DNase-seq ENCSR068KDQ [biosample_summary="Homo sapiens with multiple sclerosis; naive thymus-derived CD8-positive, alpha-beta T cell"]
 HISTOGRAM FOR DNase-seq_ENCSR068KDQ [0.034, 51.4]
n
16,932,029
mean
3.77
sd
6.18

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 169320290.53% 83454
chr1 1664522 0.67% 8139
chr2 1308350 0.54% 6418
chr3 962214 0.49% 4783
chr4 669601 0.35% 3333
chr5 777706 0.43% 3855
chr6 1043777 0.61% 5074
chr7 822783 0.52% 4059
chr8 652858 0.45% 3251
chr9 668361 0.48% 3350
chr10 764720 0.57% 3785
chr11 847683 0.63% 4153
chr12 876141 0.66% 4321
chr13 397094 0.35% 1940
chr14 614827 0.57% 3001
chr15 543358 0.53% 2720
chr16 609771 0.67% 3033
chr17 949730 1.14% 4668
chr18 289269 0.36% 1437
chr19 870982 1.49% 4234
chr20 450336 0.70% 2238
chr21 223910 0.48% 1087
chr22 365119 0.72% 1837
chrX 558720 0.36% 2736
chrY 197 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 83454 1 1500 202.89 200
global segment-length histogram

Files

Filename Size md5
ENCFF215OLX.bed.gz 926.17 KB 28ed1d1e7a7530847a50235dd2906fc4
ENCFF215OLX.tabix.bed.gz 854.57 KB c1a5d692349fdc38a196f4421c549179
ENCFF215OLX.tabix.bed.gz.tbi 331.59 KB c064eba18fd2ff3d616183a95bf88c58
genomic_resource.yaml 1.33 KB 8730de5df2f9331891f74340dc1ababe
statistics/