Resource

Id DNase-seq/ENCSR060ZXQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR060ZXQ [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
Description
Labels
  • accession: ENCSR060ZXQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)
  • date_created: 2020-04-18T22:21:49.606538+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR060ZXQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR060ZXQ float

DNase-seq_ENCSR060ZXQ
DNase-seq ENCSR060ZXQ [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR060ZXQ [0.321, 40.1]
n
7,413,442
mean
5.69
sd
5.36

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 74134420.23% 37817
chr1 771497 0.31% 3905
chr2 516137 0.21% 2659
chr3 395449 0.20% 2027
chr4 244303 0.13% 1238
chr5 338547 0.19% 1745
chr6 435050 0.25% 2222
chr7 346460 0.22% 1777
chr8 271298 0.19% 1402
chr9 296204 0.21% 1534
chr10 329510 0.25% 1686
chr11 375160 0.28% 1923
chr12 384403 0.29% 1945
chr13 155812 0.14% 776
chr14 260353 0.24% 1342
chr15 248182 0.24% 1288
chr16 305815 0.34% 1552
chr17 459573 0.55% 2309
chr18 110731 0.14% 577
chr19 489118 0.83% 2393
chr20 195965 0.30% 1032
chr21 90150 0.19% 452
chr22 173246 0.34% 900
chrX 220479 0.14% 1133
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 37817 1 860 196.03 190
global segment-length histogram

Files

Filename Size md5
ENCFF483MAS.bed.gz 414.52 KB 3e9d37ee0e4473f92bc12930491a8164
ENCFF483MAS.tabix.bed.gz 376.49 KB 2ec7ecf072f48b31d40c07f7559805cf
ENCFF483MAS.tabix.bed.gz.tbi 201.52 KB b3e92a87f3c3419e6239583d6def0c71
genomic_resource.yaml 1.88 KB bd2e9f54116502ec071a2e1c948ace5f
statistics/