Resource

Id DNase-seq/ENCSR060TTRcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR060TTR [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours"]
Description
Labels
  • accession: ENCSR060TTR
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours
  • date_created: 2020-04-19T18:36:50.101336+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR060TTR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR060TTR float

DNase-seq_ENCSR060TTR
DNase-seq ENCSR060TTR [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR060TTR [0.508, 53.9]
n
6,297,811
mean
7.44
sd
6.11

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 62978110.20% 32816
chr1 645624 0.26% 3330
chr2 438698 0.18% 2317
chr3 349818 0.18% 1817
chr4 221099 0.12% 1110
chr5 277706 0.15% 1454
chr6 355067 0.21% 1870
chr7 294485 0.18% 1538
chr8 232333 0.16% 1242
chr9 261502 0.19% 1387
chr10 268306 0.20% 1436
chr11 325410 0.24% 1679
chr12 322573 0.24% 1669
chr13 124304 0.11% 630
chr14 210386 0.20% 1096
chr15 204776 0.20% 1093
chr16 280173 0.31% 1434
chr17 380248 0.46% 1979
chr18 95091 0.12% 504
chr19 436619 0.74% 2167
chr20 178742 0.28% 964
chr21 72060 0.15% 384
chr22 156650 0.31% 829
chrX 166141 0.11% 887
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 32816 7 700 191.91 184
global segment-length histogram

Files

Filename Size md5
ENCFF748XNP.bed.gz 354.77 KB c1557cf428a6a807354d7db5032ac4f7
ENCFF748XNP.tabix.bed.gz 317.82 KB aaa56e3a4af007b28ad21f2cc11a8962
ENCFF748XNP.tabix.bed.gz.tbi 183.83 KB 7ca930e4cfc1c48e8a143bcfbf8c2726
genomic_resource.yaml 2.47 KB d43dc7c0f1ec84e1544cbb16e3d0907c
statistics/