Resource
| Id | DNase-seq/ENCSR060HPL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR060HPL [biosample_summary="Homo sapiens coronary artery tissue female adult (53 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN776MIQ|/analyses/ENCAN776MIQ/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF564ZSB|/files/ENCFF564ZSB/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR060HPL | float |
DNase-seq_ENCSR060HPL |
DNase-seq ENCSR060HPL [biosample_summary="Homo sapiens coronary artery tissue female adult (53 years)"]
|
 |
[1, 4.33e+03] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 32011194 | 0.99% | 212676 |
| chr1 | 2843013 | 1.14% | 18891 |
| chr2 | 2891098 | 1.19% | 19198 |
| chr3 | 1734675 | 0.87% | 11521 |
| chr4 | 1006727 | 0.53% | 6672 |
| chr5 | 1587988 | 0.87% | 10548 |
| chr6 | 1438293 | 0.84% | 9548 |
| chr7 | 1569829 | 0.99% | 10439 |
| chr8 | 1387095 | 0.96% | 9211 |
| chr9 | 1451931 | 1.05% | 9640 |
| chr10 | 2032928 | 1.52% | 13510 |
| chr11 | 1865915 | 1.38% | 12401 |
| chr12 | 1220317 | 0.92% | 8106 |
| chr13 | 769180 | 0.67% | 5106 |
| chr14 | 1102613 | 1.03% | 7322 |
| chr15 | 1231308 | 1.21% | 8190 |
| chr16 | 1150477 | 1.27% | 7653 |
| chr17 | 1484555 | 1.78% | 9875 |
| chr18 | 692895 | 0.86% | 4608 |
| chr19 | 1078371 | 1.84% | 7163 |
| chr20 | 1082368 | 1.68% | 7186 |
| chr21 | 534440 | 1.14% | 3555 |
| chr22 | 937475 | 1.84% | 6240 |
| chrX | 895973 | 0.57% | 5948 |
| chrY | 21730 | 0.04% | 145 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 212676 | 1 | 501 | 150.52 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF822UQG.bed.gz | 1.94 MB | 334a19a1f14ead51fc26f618d0b5dbdc |
| ENCFF822UQG.tabix.bed.gz | 1.66 MB | da7a6b8e93831f5c45e95495f619955b |
| ENCFF822UQG.tabix.bed.gz.tbi | 380.33 KB | 5398fb3a541e784a81dd058dcc0d2962 |
| genomic_resource.yaml | 2.21 KB | a663f3898dc5efb9a5362a384b0e02c6 |
| statistics/ |