Resource

Id DNase-seq/ENCSR058ELMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR058ELM [biosample_summary="Homo sapiens T-helper 1 cell male adult (30 years)"]
Description
Labels
  • accession: ENCSR058ELM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000545/
  • biosample_summary: Homo sapiens T-helper 1 cell male adult (30 years)
  • date_created: 2020-05-11T15:49:01.792263+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR058ELM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (30 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR058ELM float

DNase-seq_ENCSR058ELM

DNase-seq ENCSR058ELM [biosample_summary="Homo sapiens T-helper 1 cell male adult (30 years)"]
HISTOGRAM FOR DNase-seq_ENCSR058ELM [0.127, 91.2]
n
8,812,251
mean
8.99
sd
12.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 88122510.27% 46718
chr1 903623 0.36% 4783
chr2 588418 0.24% 3160
chr3 466318 0.24% 2454
chr4 295282 0.16% 1580
chr5 377926 0.21% 2013
chr6 509935 0.30% 2670
chr7 393813 0.25% 2083
chr8 320545 0.22% 1714
chr9 348672 0.25% 1861
chr10 394567 0.29% 2084
chr11 462259 0.34% 2475
chr12 448813 0.34% 2371
chr13 169544 0.15% 901
chr14 322205 0.30% 1707
chr15 279568 0.27% 1512
chr16 371473 0.41% 1941
chr17 547405 0.66% 2896
chr18 133757 0.17% 713
chr19 620530 1.06% 3207
chr20 249287 0.39% 1338
chr21 101329 0.22% 547
chr22 224011 0.44% 1204
chrX 273848 0.18% 1455
chrY 9123 0.02% 49
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 46718 5 920 188.63 180
global segment-length histogram

Files

Filename Size md5
ENCFF655KZU.bed.gz 529.71 KB cd2e377c6e1f1beb5eb545c89694610a
ENCFF655KZU.tabix.bed.gz 482.85 KB 5249a8ce222b978d42caed2ee52c1840
ENCFF655KZU.tabix.bed.gz.tbi 214.52 KB 38f6242096c3208a82518f05065c8fe2
genomic_resource.yaml 1.21 KB 7a8cf076df2004720b6eb784c4c3ba68
statistics/