Resource

Id DNase-seq/ENCSR056PFIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR056PFI [biosample_summary="Homo sapiens pancreas tissue male adult (26 years)"]
Description
Labels
  • accession: ENCSR056PFI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001264/
  • biosample_summary: Homo sapiens pancreas tissue male adult (26 years)
  • date_created: 2019-11-01T19:22:26.655295+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR056PFI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (26 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR056PFI float

DNase-seq_ENCSR056PFI

DNase-seq ENCSR056PFI [biosample_summary="Homo sapiens pancreas tissue male adult (26 years)"]
HISTOGRAM FOR DNase-seq_ENCSR056PFI [0.0648, 52]
n
16,480,401
mean
3.73
sd
5.34

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 164804010.51% 86948
chr1 1640828 0.66% 8623
chr2 1179254 0.49% 6341
chr3 915582 0.46% 4912
chr4 642218 0.34% 3485
chr5 754333 0.42% 4067
chr6 848965 0.50% 4565
chr7 815820 0.51% 4288
chr8 706072 0.49% 3787
chr9 746386 0.54% 3882
chr10 804242 0.60% 4304
chr11 938018 0.69% 4849
chr12 760969 0.57% 3987
chr13 317303 0.28% 1705
chr14 550921 0.51% 2894
chr15 571325 0.56% 3032
chr16 707459 0.78% 3601
chr17 884801 1.06% 4574
chr18 293580 0.37% 1589
chr19 873798 1.49% 4336
chr20 469722 0.73% 2509
chr21 180506 0.39% 989
chr22 428698 0.84% 2194
chrX 429242 0.28% 2323
chrY 20359 0.04% 112
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 86948 1 860 189.54 180
global segment-length histogram

Files

Filename Size md5
ENCFF165ZJA.bed.gz 971.69 KB 7c080fca04c59a8b52f9ec7f4657eaf6
ENCFF165ZJA.tabix.bed.gz 885.37 KB 30698df779c6a98899071613dfd2ad93
ENCFF165ZJA.tabix.bed.gz.tbi 351.53 KB f2f30352836ffcee623549f6d2ee79d7
genomic_resource.yaml 1.2 KB 2ff9d6de98ac78c1d8e17ff8f73c29c1
statistics/