Resource

Id DNase-seq/ENCSR047FNHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR047FNH [biosample_summary="Homo sapiens large intestine tissue male embryo (113 days)"]
Description
Labels
  • accession: ENCSR047FNH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000059/
  • biosample_summary: Homo sapiens large intestine tissue male embryo (113 days)
  • date_created: 2015-09-16T21:42:20.364783+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR047FNH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (113 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR047FNH float

DNase-seq_ENCSR047FNH
DNase-seq ENCSR047FNH [biosample_summary="Homo sapiens large intestine tissue male embryo (113 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR047FNH [0.153, 12.5]
n
12,657,986
mean
1.67
sd
1.27

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 126579860.39% 64063
chr1 1230167 0.49% 6209
chr2 1008633 0.42% 5159
chr3 818435 0.41% 4173
chr4 659959 0.35% 3306
chr5 659822 0.36% 3354
chr6 784952 0.46% 3996
chr7 642718 0.40% 3238
chr8 533097 0.37% 2745
chr9 521420 0.38% 2610
chr10 574308 0.43% 2914
chr11 643496 0.48% 3252
chr12 640973 0.48% 3235
chr13 326832 0.29% 1654
chr14 425609 0.40% 2091
chr15 395477 0.39% 2038
chr16 410766 0.45% 2099
chr17 556749 0.67% 2844
chr18 301494 0.38% 1506
chr19 533936 0.91% 2509
chr20 313137 0.49% 1610
chr21 142269 0.30% 717
chr22 233979 0.46% 1209
chrX 284991 0.18% 1521
chrY 14767 0.03% 74
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 64063 1 900 197.59 194
global segment-length histogram

Files

Filename Size md5
ENCFF235JPE.bed.gz 670.83 KB d9070a7d2b1e7e3bea55d7fd2244f1c9
ENCFF235JPE.tabix.bed.gz 605.65 KB eaac491b52dd135762ab37af3f8f3c33
ENCFF235JPE.tabix.bed.gz.tbi 316.32 KB 74e9f0c388c974869dc6910ddeabd68d
genomic_resource.yaml 2.13 KB 6d06ba7f4e3bbe3cc193fe7b5b1e886f
statistics/