Resource

Id DNase-seq/ENCSR042WQAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR042WQA [biosample_summary="Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult (56 years)"]
Description
Labels
  • accession: ENCSR042WQA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000792/
  • biosample_summary: Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult (56 years)
  • date_created: 2020-04-11T19:43:49.213453+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR042WQA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (56 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR042WQA float

DNase-seq_ENCSR042WQA
DNase-seq ENCSR042WQA [biosample_summary="Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult (56 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR042WQA [0.108, 77.7]
n
8,568,019
mean
7.8
sd
10.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 85680190.27% 43852
chr1 897318 0.36% 4556
chr2 573443 0.24% 2958
chr3 456522 0.23% 2333
chr4 284838 0.15% 1440
chr5 376889 0.21% 1924
chr6 493405 0.29% 2517
chr7 394092 0.25% 2048
chr8 309829 0.21% 1593
chr9 335563 0.24% 1719
chr10 372855 0.28% 1916
chr11 439557 0.33% 2274
chr12 436773 0.33% 2251
chr13 158718 0.14% 823
chr14 304239 0.28% 1558
chr15 274788 0.27% 1437
chr16 352324 0.39% 1809
chr17 532305 0.64% 2679
chr18 127626 0.16% 662
chr19 617176 1.05% 3093
chr20 238765 0.37% 1241
chr21 98946 0.21% 506
chr22 209897 0.41% 1086
chrX 272697 0.17% 1383
chrY 9454 0.02% 46
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 43852 10 820 195.38 180
global segment-length histogram

Files

Filename Size md5
ENCFF787PXT.bed.gz 498.66 KB 05ac68f3c6a3af83b90d610f005e70d3
ENCFF787PXT.tabix.bed.gz 455.7 KB 7d020602feda0e6c8df5cd6d72854a2b
ENCFF787PXT.tabix.bed.gz.tbi 201.93 KB f6f580e9d03d2ce1c6aafcda2b3266a1
genomic_resource.yaml 1.33 KB 4b6be3cb6fc32d309d05d0a5d00c3336
statistics/