Resource

Id DNase-seq/ENCSR041PCLcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR041PCL [biosample_summary="Homo sapiens T-cell female adult (33 years)"]
Description
Labels
  • accession: ENCSR041PCL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell female adult (33 years)
  • date_created: 2020-04-18T05:18:58.696211+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR041PCL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR041PCL float

DNase-seq_ENCSR041PCL

DNase-seq ENCSR041PCL [biosample_summary="Homo sapiens T-cell female adult (33 years)"]
HISTOGRAM FOR DNase-seq_ENCSR041PCL [0.0694, 78.5]
n
11,473,529
mean
6.29
sd
8.93

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 114735290.36% 61158
chr1 1167724 0.47% 6198
chr2 815228 0.34% 4364
chr3 621620 0.31% 3311
chr4 385301 0.20% 2041
chr5 505268 0.28% 2689
chr6 640205 0.37% 3373
chr7 528829 0.33% 2848
chr8 423500 0.29% 2284
chr9 461864 0.33% 2469
chr10 524877 0.39% 2786
chr11 607378 0.45% 3254
chr12 572585 0.43% 3049
chr13 230270 0.20% 1229
chr14 397794 0.37% 2143
chr15 377197 0.37% 2047
chr16 479823 0.53% 2548
chr17 700048 0.84% 3691
chr18 174628 0.22% 931
chr19 740427 1.26% 3863
chr20 325962 0.51% 1767
chr21 145163 0.31% 784
chr22 290554 0.57% 1570
chrX 357091 0.23% 1917
chrY 193 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 61158 7 760 187.6 180
global segment-length histogram

Files

Filename Size md5
ENCFF198ROL.bed.gz 696.71 KB 341449755c5e625520f0637eaa2a05a2
ENCFF198ROL.tabix.bed.gz 634.2 KB 6bf077a993e48dd57ac21e6d06d978c4
ENCFF198ROL.tabix.bed.gz.tbi 257.79 KB de1f26a2570c8e6e0e5db10630adc1b2
genomic_resource.yaml 1.19 KB 4b279a1f6d1d7f18dcec64b47a8151ce
statistics/