Resource
| Id | DNase-seq/ENCSR040DGJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR040DGJ [biosample_summary="Homo sapiens T-cell"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN996CZW|/analyses/ENCAN996CZW/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR040DGJ | float |
DNase-seq_ENCSR040DGJ |
DNase-seq ENCSR040DGJ [biosample_summary="Homo sapiens T-cell"]
|
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[3, 1.18e+03] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 6620818 | 0.21% | 44073 |
| chr1 | 667841 | 0.27% | 4446 |
| chr2 | 487094 | 0.20% | 3246 |
| chr3 | 388334 | 0.20% | 2583 |
| chr4 | 264600 | 0.14% | 1760 |
| chr5 | 314850 | 0.17% | 2094 |
| chr6 | 401400 | 0.24% | 2671 |
| chr7 | 314163 | 0.20% | 2091 |
| chr8 | 251400 | 0.17% | 1674 |
| chr9 | 262200 | 0.19% | 1744 |
| chr10 | 295985 | 0.22% | 1968 |
| chr11 | 342254 | 0.25% | 2279 |
| chr12 | 344334 | 0.26% | 2293 |
| chr13 | 144600 | 0.13% | 963 |
| chr14 | 228750 | 0.21% | 1523 |
| chr15 | 208950 | 0.20% | 1393 |
| chr16 | 243300 | 0.27% | 1621 |
| chr17 | 364611 | 0.44% | 2424 |
| chr18 | 115200 | 0.14% | 766 |
| chr19 | 364350 | 0.62% | 2425 |
| chr20 | 176474 | 0.27% | 1177 |
| chr21 | 81242 | 0.17% | 542 |
| chr22 | 146063 | 0.29% | 972 |
| chrX | 211473 | 0.14% | 1409 |
| chrY | 1350 | <0.01% | 9 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 44073 | 5 | 300 | 150.22 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF168YQF.bed.gz | 432.33 KB | 56d8d32d23e50cd4828a5d33f18f4519 |
| ENCFF168YQF.tabix.bed.gz | 374.94 KB | dc3b41d756b057abfe14a4a6b1e8f1c6 |
| ENCFF168YQF.tabix.bed.gz.tbi | 243.75 KB | 0ec345c951e44685e13120c36560e3f2 |
| genomic_resource.yaml | 1.26 KB | d2705a026177aef89974c2383ec16156 |
| statistics/ |
