Resource

Id DNase-seq/ENCSR038XTKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR038XTK [biosample_summary="Homo sapiens HCEC 1CT"]
Description
Labels
  • accession: ENCSR038XTK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0009500/
  • biosample_summary: Homo sapiens HCEC 1CT
  • date_created: 2015-12-15T19:06:15.807276+00:00
  • date_released: 2017-12-13
  • doi: 10.17989/ENCSR038XTK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR038XTK float

DNase-seq_ENCSR038XTK
DNase-seq ENCSR038XTK [biosample_summary="Homo sapiens HCEC 1CT"]
 HISTOGRAM FOR DNase-seq_ENCSR038XTK [0.0329, 19.9]
n
34,531,528
mean
2.06
sd
2.25

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 345315281.07% 190622
chr1 3246779 1.30% 17970
chr2 3031361 1.25% 16771
chr3 2428853 1.22% 13362
chr4 1613928 0.85% 9126
chr5 2169751 1.20% 11996
chr6 2258587 1.32% 12405
chr7 1812622 1.14% 10008
chr8 1736767 1.20% 9614
chr9 1468989 1.06% 8078
chr10 1631423 1.22% 9020
chr11 1702010 1.26% 9360
chr12 1804944 1.35% 9922
chr13 989213 0.86% 5512
chr14 1105369 1.03% 6067
chr15 1123443 1.10% 6193
chr16 925405 1.02% 5119
chr17 1319538 1.58% 7210
chr18 715069 0.89% 3982
chr19 918879 1.57% 4902
chr20 758797 1.18% 4196
chr21 352486 0.75% 1911
chr22 473156 0.93% 2627
chrX 896872 0.57% 5006
chrY 47287 0.08% 265
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 190622 5 780 181.15 180
global segment-length histogram

Files

Filename Size md5
ENCFF458RQN.bed.gz 2.07 MB de22a01475ccb4c682d2ffccf48a67ea
ENCFF458RQN.tabix.bed.gz 1.88 MB 50467e58bee0a9610da91ad33cb20ad4
ENCFF458RQN.tabix.bed.gz.tbi 588.9 KB a774eab1a80e0117ec4874f83d2f9be9
genomic_resource.yaml 1.07 KB ac94e84cac01318062c185c3d1463766
statistics/