Resource

Id DNase-seq/ENCSR035RVHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR035RVH [biosample_summary="Homo sapiens foreskin keratinocyte male newborn"]
Description
Labels
  • accession: ENCSR035RVH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_1001606/
  • biosample_summary: Homo sapiens foreskin keratinocyte male newborn
  • date_created: 2015-09-16T21:42:14.412822+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR035RVH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male newborn
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR035RVH float

DNase-seq_ENCSR035RVH

DNase-seq ENCSR035RVH [biosample_summary="Homo sapiens foreskin keratinocyte male newborn"]
HISTOGRAM FOR DNase-seq_ENCSR035RVH [0.0415, 20.1]
n
48,537,773
mean
1.39
sd
1.69

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 485377731.51% 235357
chr1 4473316 1.80% 21428
chr2 4075032 1.68% 19888
chr3 3349120 1.69% 16208
chr4 2987778 1.57% 14591
chr5 2902917 1.60% 14064
chr6 3082786 1.80% 14772
chr7 2480800 1.56% 12025
chr8 2263552 1.56% 10987
chr9 2022519 1.46% 9873
chr10 2268285 1.70% 11105
chr11 2388852 1.77% 11587
chr12 2468753 1.85% 11860
chr13 1424284 1.25% 6973
chr14 1486528 1.39% 7210
chr15 1501067 1.47% 7277
chr16 1336615 1.48% 6487
chr17 1704439 2.05% 8225
chr18 1200474 1.49% 5820
chr19 1193221 2.04% 5706
chr20 1154679 1.79% 5594
chr21 581412 1.24% 2822
chr22 674087 1.33% 3272
chrX 1405745 0.90% 7027
chrY 111512 0.19% 556
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 235357 1 1220 206.23 200
global segment-length histogram

Files

Filename Size md5
ENCFF442IPQ.bed.gz 2.48 MB 8b283fc17964c9e8f22c943759ee1509
ENCFF442IPQ.tabix.bed.gz 2.27 MB 2286e7cf8eceea9f1b22ec33748e0be2
ENCFF442IPQ.tabix.bed.gz.tbi 731.31 KB 742596f9e3309ccd39fc0b1f921f5a24
genomic_resource.yaml 1.18 KB 0a36b93f393de241d5cab8f5dcdf6463
statistics/