Resource

Id DNase-seq/ENCSR035QHHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR035QHH [biosample_summary="Homo sapiens placenta tissue female embryo (113 days)"]
Description
Labels
  • accession: ENCSR035QHH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001987/
  • biosample_summary: Homo sapiens placenta tissue female embryo (113 days)
  • date_created: 2015-09-16T21:42:42.654315+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR035QHH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (113 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR035QHH float

DNase-seq_ENCSR035QHH
DNase-seq ENCSR035QHH [biosample_summary="Homo sapiens placenta tissue female embryo (113 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR035QHH [0.0222, 13.1]
n
47,977,233
mean
1.13
sd
1.29

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 479772331.49% 231068
chr1 4594690 1.85% 21929
chr2 3877578 1.60% 18915
chr3 3182714 1.61% 15521
chr4 2540961 1.34% 12394
chr5 2701457 1.49% 13097
chr6 3062491 1.79% 14604
chr7 2593504 1.63% 12501
chr8 2138567 1.47% 10331
chr9 2021917 1.46% 9689
chr10 2262694 1.69% 10944
chr11 2377862 1.76% 11425
chr12 2320941 1.74% 11197
chr13 1161628 1.02% 5627
chr14 1485356 1.39% 7037
chr15 1515830 1.49% 7245
chr16 1440040 1.59% 6937
chr17 1902850 2.29% 9029
chr18 1021562 1.27% 4966
chr19 1663997 2.84% 7713
chr20 1230647 1.91% 5968
chr21 529620 1.13% 2514
chr22 798947 1.57% 3843
chrX 1549802 0.99% 7630
chrY 1578 <0.01% 12
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 231068 1 1240 207.63 200
global segment-length histogram

Files

Filename Size md5
ENCFF710GDX.bed.gz 2.46 MB 9c4dd9bcfb41974bcca38c569bcb4990
ENCFF710GDX.tabix.bed.gz 2.27 MB 0782570f34a9d509f2eeb055ca58e0f2
ENCFF710GDX.tabix.bed.gz.tbi 653.27 KB 1b8e6e026fe84eeb549af825d209eae7
genomic_resource.yaml 1.22 KB 1c7988f29709ce2b29e087296156566f
statistics/