Resource

Id DNase-seq/ENCSR025EYJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR025EYJ [biosample_summary="Homo sapiens T-cell male adult (48 years)"]
Description
Labels
  • accession: ENCSR025EYJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (48 years)
  • date_created: 2020-04-12T19:00:08.975667+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR025EYJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (48 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR025EYJ float

DNase-seq_ENCSR025EYJ
DNase-seq ENCSR025EYJ [biosample_summary="Homo sapiens T-cell male adult (48 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR025EYJ [0.182, 54.7]
n
7,504,388
mean
6.88
sd
8.03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 75043880.23% 40498
chr1 766482 0.31% 4107
chr2 516545 0.21% 2811
chr3 403228 0.20% 2178
chr4 255566 0.13% 1388
chr5 320953 0.18% 1730
chr6 431791 0.25% 2344
chr7 344068 0.22% 1860
chr8 272941 0.19% 1485
chr9 297670 0.22% 1599
chr10 324321 0.24% 1785
chr11 384452 0.28% 2087
chr12 376725 0.28% 2044
chr13 150717 0.13% 801
chr14 267066 0.25% 1425
chr15 235901 0.23% 1287
chr16 320606 0.35% 1727
chr17 486591 0.58% 2614
chr18 117658 0.15% 653
chr19 523805 0.89% 2719
chr20 215427 0.33% 1183
chr21 87224 0.19% 471
chr22 186927 0.37% 1018
chrX 209103 0.13% 1136
chrY 8621 0.02% 46
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 40498 8 824 185.3 180
global segment-length histogram

Files

Filename Size md5
ENCFF022CDR.bed.gz 445.58 KB 4eebff15c4b5f4c649fcdf9b2ead9b1c
ENCFF022CDR.tabix.bed.gz 407.04 KB 47303d1e027a200991893e2187a7c3a8
ENCFF022CDR.tabix.bed.gz.tbi 205.69 KB 8424fb94d30a8d0f1457ce76ee904c71
genomic_resource.yaml 1.79 KB 3c2681db01676f3af9c785bad40c68da
statistics/