Resource

Id DNase-seq/ENCSR024BXNcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR024BXN [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (82 years)"]
Description
Labels
  • accession: ENCSR024BXN
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens head of caudate nucleus tissue female adult (82 years)
  • date_created: 2020-12-10T18:27:50.069904+00:00
  • date_released: 2021-01-12
  • doi: 10.17989/ENCSR024BXN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (82 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR024BXN float

DNase-seq_ENCSR024BXN
DNase-seq ENCSR024BXN [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (82 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR024BXN [0.0843, 23.9]
n
13,711,685
mean
2.54
sd
2.61

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 137116850.43% 73303
chr1 1337220 0.54% 7113
chr2 998709 0.41% 5404
chr3 800856 0.40% 4262
chr4 547373 0.29% 2935
chr5 688426 0.38% 3727
chr6 717525 0.42% 3831
chr7 667216 0.42% 3581
chr8 566113 0.39% 3052
chr9 609613 0.44% 3245
chr10 664909 0.50% 3555
chr11 769254 0.57% 4102
chr12 671193 0.50% 3536
chr13 299713 0.26% 1624
chr14 440746 0.41% 2369
chr15 456130 0.45% 2449
chr16 548974 0.61% 2931
chr17 716234 0.86% 3774
chr18 267494 0.33% 1492
chr19 736840 1.26% 3747
chr20 383200 0.59% 2131
chr21 149774 0.32% 800
chr22 334385 0.66% 1815
chrX 339446 0.22% 1825
chrY 342 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 73303 1 840 187.05 180
global segment-length histogram

Files

Filename Size md5
ENCFF400BFG.bed.gz 813.96 KB 2bf98183e1c76df118938fd153037f74
ENCFF400BFG.tabix.bed.gz 740.22 KB f53a23a690ede359121a89db54c62f53
ENCFF400BFG.tabix.bed.gz.tbi 326.42 KB 2c133c9fda0befe9ba350f4eebe88b46
genomic_resource.yaml 1.26 KB 0e8741c7c838b41c0ced3c57eb1d12a9
statistics/